X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=4c40d2ddad61fdc71eb124a4d2b4b43d86d6cf49;hb=a92b8392b04de472326ae92dfc14a541924ebc6b;hp=22977a99d893fbe296487a5d3c44056a8ee6fc7c;hpb=2968a8a986d2fbaa70d517f09e02dc3f711a1728;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 22977a9..4c40d2d 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -2942,10 +2942,10 @@ public class Jalview2XML
     }
 
     af.setMenusFromViewport(af.viewport);
-    af.alignPanel.updateAnnotation(false); // recompute any autoannotation
     // TODO: we don't need to do this if the viewport is aready visible.
     Desktop.addInternalFrame(af, view.getTitle(), view.getWidth(), view
             .getHeight());
+    af.alignPanel.updateAnnotation(false); // recompute any autoannotation
     return af;
   }