X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=81a68871e39025419c14d0b850f5b30c29d0690f;hb=cc4553c3b742463f2b325b2219480b304ce662cb;hp=8406299b6e6bd08b91abf0a96555a53c0b96f50a;hpb=dd6a434e05eef33808d4cda23dd2c6f8d10a4630;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 8406299..81a6887 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -309,8 +309,10 @@ public class Jalview2XML
                 Annotation an = new Annotation();
                 an.setDescription(aa[i].description);
                 if(aa[i].graph>0)
+                {
                   an.setGraph(true);
-
+                  an.setGraphType(aa[i].graph);
+                }
                 an.setLabel(aa[i].label);
 
                 AnnotationElement ae;
@@ -720,7 +722,7 @@ public class Jalview2XML
                 {
                     jaa = new jalview.datamodel.AlignmentAnnotation(an[i].getLabel(),
                             an[i].getDescription(), anot, 0, 0,
-                            jalview.datamodel.AlignmentAnnotation.BAR_GRAPH);
+                            an[i].getGraphType());
                 }
                 else
                 {