X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=8e771115b4b932f9f0f76b10246039f33356ce43;hb=af4672ad3ed5b549ac78488e4e0aa9d2cde04ce9;hp=5317d4c6ac6f73bb9990d40bd07c89496a07d3c7;hpb=b38b42d46d77f6b155e7a1c3447861ca14c04189;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 5317d4c..8e77111 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1133,7 +1133,7 @@ public class Jalview2XML
       view.setShowGroupConservation(av.isShowGroupConservation());
       view.setShowNPfeatureTooltip(av.isShowNPFeats());
       view.setShowDbRefTooltip(av.isShowDBRefs());
-      view.setFollowHighlight(av.followHighlight);
+      view.setFollowHighlight(av.isFollowHighlight());
       view.setFollowSelection(av.followSelection);
       view.setIgnoreGapsinConsensus(av.isIgnoreGapsConsensus());
       if (av.getFeaturesDisplayed() != null)
@@ -2263,6 +2263,13 @@ public class Jalview2XML
     int height = (int) (dnaFrame.getBounds().getHeight()
             + proteinFrame.getBounds().getHeight() + 50);
     Desktop.addInternalFrame(splitFrame, title, width, height);
+
+    /*
+     * And compute cDNA consensus (couldn't do earlier with consensus as
+     * mappings were not yet present)
+     */
+    proteinFrame.viewport.alignmentChanged(proteinFrame.alignPanel);
+
     return splitFrame;
   }
 
@@ -3837,7 +3844,7 @@ public class Jalview2XML
     }
     if (view.hasFollowHighlight())
     {
-      af.viewport.followHighlight = view.getFollowHighlight();
+      af.viewport.setFollowHighlight(view.getFollowHighlight());
     }
     if (view.hasFollowSelection())
     {