X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=b608b9502fcd41dc8e4b57c94a7eebb264f8dbfe;hb=cedd8bb81245ba719e6d54688d763e341b3cc695;hp=dfacd544137b169f01c7ce82aca82aa149325829;hpb=9c37999eb4b461a5c7a94e10ac39583c1c29200a;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index dfacd54..b608b95 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1419,7 +1419,16 @@ public class Jalview2XML
         calcIdSet.add(aa[i].getCalcId());
         an.setCalcId(aa[i].getCalcId());
       }
-
+      if (aa[i].hasProperties())
+      {
+        for (String pr : aa[i].getProperties())
+        {
+          Property prop = new Property();
+          prop.setName(pr);
+          prop.setValue(aa[i].getProperty(pr));
+          an.addProperty(prop);
+        }
+      }
       AnnotationElement ae;
       if (aa[i].annotations != null)
       {
@@ -2631,6 +2640,14 @@ public class Jalview2XML
           jaa.belowAlignment = an[i].isBelowAlignment();
         }
         jaa.setCalcId(an[i].getCalcId());
+        if (an[i].getPropertyCount() > 0)
+        {
+          for (jalview.schemabinding.version2.Property prop : an[i]
+                  .getProperty())
+          {
+            jaa.setProperty(prop.getName(), prop.getValue());
+          }
+        }
         if (jaa.autoCalculated)
         {
           autoAlan.add(new JvAnnotRow(i, jaa));