X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=d652da2a5aec05c6abeda173a8c290f6019d2211;hb=15ade8926ea520ead84b0dd75c6a3aaac7368bc5;hp=db60b8bdf777a752e2025ee4a5a2d863e57c2d2f;hpb=9d64429d4fbb50c23d9d66e1de396f8a3d1927b8;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index db60b8b..d652da2 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -506,18 +506,18 @@ public class Jalview2XML
           jalview.schemabinding.version2.FeatureSettings fs
               = new jalview.schemabinding.version2.FeatureSettings();
 
-          Enumeration e = af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().featureColours.keys();
-          while (e.hasMoreElements())
+          String [] renderOrder =
+              af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().renderOrder;
+          for(int ro=0; ro<renderOrder.length; ro++)
           {
-            String type = e.nextElement().toString();
             Setting setting = new Setting();
-            setting.setType(type);
+            setting.setType(renderOrder[ro]);
             setting.setColour(
-                af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().getColour(type).getRGB()
+                af.alignPanel.seqPanel.seqCanvas.getFeatureRenderer().getColour(renderOrder[ro]).getRGB()
                 );
 
             setting.setDisplay(
-                av.featuresDisplayed.containsKey(type)
+                av.featuresDisplayed.containsKey(renderOrder[ro])
                 );
 
             fs.addSetting(setting);