X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=e63984425888244bcd1e1fe8debdf455a7efeeed;hb=aaf78c2f304b237a9c800137126967ace9437c99;hp=5a13723499a52162dfb028846069bbf27a98cc54;hpb=f8efe615d1c7d5c23fd838c1abcd77be542b154c;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
old mode 100755
new mode 100644
index 5a13723..e639844
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -48,7 +48,7 @@ import jalview.util.jarInputStreamProvider;
  * will be :)
  * 
  * @author $author$
- * @version $Revision$
+ * @version $Revision: 1.134 $
  */
 public class Jalview2XML
 {
@@ -2831,8 +2831,7 @@ public class Jalview2XML
               String pdbFile = (String) filedat[0];
               SequenceI[] seq = (SequenceI[]) ((Vector<SequenceI>) filedat[2])
                       .toArray(new SequenceI[0]);
-              StructureSelectionManager.getStructureSelectionManager()
-                      .setMapping(seq, null, pdbFile,
+              ((AppJmol) comp).jmb.ssm.setMapping(seq, null, pdbFile,
                               jalview.io.AppletFormatAdapter.FILE);
               ((AppJmol) comp).jmb.addSequenceForStructFile(pdbFile, seq);
             }