X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML.java;h=e88b190a79833cc354bbde21e6f1dd3114df8b14;hb=f52d7fc6ab9bf2c926f0208c225d3dc6e65c8ecf;hp=3459fc826e22478becc09b3194c0a70723aed75c;hpb=ad20cd92225f2ee8c251d39b00b90555d382a616;p=jalview.git

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 3459fc8..e88b190 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -1678,12 +1678,27 @@ public class Jalview2XML
 
       jarInputStreamProvider jprovider = createjarInputStreamProvider(file);
       af = LoadJalviewAlign(jprovider);
-      setLoadingFinishedForNewStructureViewers();
+      
     } catch (MalformedURLException e)
     {
       errorMessage = "Invalid URL format for '" + file + "'";
       reportErrors();
     }
+    finally {
+      try
+      {
+        SwingUtilities.invokeAndWait(new Runnable()
+        {
+          public void run()
+          {
+            setLoadingFinishedForNewStructureViewers();
+          };
+        });
+      } catch (Exception x)
+      {
+
+      }
+    }
     return af;
   }