X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalview2XML_V1.java;h=491746a47dbc169e3838d8e6cfc141636965ce39;hb=8c0e6138df69c25d3411cb23a03554bb0cbdd53f;hp=1e479fbddab536588eb5ad407dce2abbe6838d34;hpb=7f7fc2e5533f7b00c86465f964e37c55bcf12fd7;p=jalview.git diff --git a/src/jalview/gui/Jalview2XML_V1.java b/src/jalview/gui/Jalview2XML_V1.java index 1e479fb..491746a 100755 --- a/src/jalview/gui/Jalview2XML_V1.java +++ b/src/jalview/gui/Jalview2XML_V1.java @@ -132,7 +132,7 @@ public class Jalview2XML_V1 object = (JalviewModel) object.unmarshal(in); - af = LoadFromObject(object); + af = LoadFromObject(object, file); entryCount++; } } @@ -164,7 +164,7 @@ public class Jalview2XML_V1 return af; } - AlignFrame LoadFromObject(JalviewModel object) + AlignFrame LoadFromObject(JalviewModel object, String file) { Vector seqids = new Vector(); SequenceSet vamsasSet = object.getVamsasModel().getSequenceSet(0); @@ -268,6 +268,8 @@ public class Jalview2XML_V1 AlignFrame af = new AlignFrame(al, view.getWidth(), view.getHeight()); + af.setFileName(file, "Jalview"); + for (int i = 0; i < JSEQ.length; i++) { af.viewport.setSequenceColour(