X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJalviewChimeraXBindingModel.java;h=737e72a740b23e1b1179d1cbe06fe3859887cca3;hb=ba1f9fee25b87bdac0c535019252b787939a8f80;hp=aecad00eba5aa2b3a1f78c00732084c1c9f7a648;hpb=8b5473a7ae1f9175c6ff66a013fa342636bdfd11;p=jalview.git diff --git a/src/jalview/gui/JalviewChimeraXBindingModel.java b/src/jalview/gui/JalviewChimeraXBindingModel.java index aecad00..737e72a 100644 --- a/src/jalview/gui/JalviewChimeraXBindingModel.java +++ b/src/jalview/gui/JalviewChimeraXBindingModel.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.gui; import java.util.List; @@ -11,6 +31,7 @@ import jalview.ext.rbvi.chimera.ChimeraXCommands; import jalview.gui.StructureViewer.ViewerType; import jalview.io.DataSourceType; import jalview.structure.AtomSpec; +import jalview.structure.StructureCommand; import jalview.structure.StructureSelectionManager; public class JalviewChimeraXBindingModel extends JalviewChimeraBindingModel @@ -41,8 +62,7 @@ public class JalviewChimeraXBindingModel extends JalviewChimeraBindingModel int modelNumber = chimeraMaps.size() + 1; String command = "setattr #" + modelNumber + " models name " + pe.getId(); - // FIXME reinstate this for ChimeraX 1.2, see https://plato.cgl.ucsf.edu/trac/ChimeraX/ticket/4211#comment:2 - // executeCommand(new StructureCommand(command), false); + executeCommand(new StructureCommand(command), false); modelsToMap.add(new ChimeraModel(pe.getId(), ModelType.PDB_MODEL, modelNumber, 0)); } @@ -89,7 +109,9 @@ public class JalviewChimeraXBindingModel extends JalviewChimeraBindingModel } /** - * Returns a model of the structure positions described by the ChimeraX format atomspec + * Returns a model of the structure positions described by the ChimeraX format + * atomspec + * * @param atomSpec * @return */