X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FJvOptionPane.java;h=7a5daf705eb1ba3f8856d8874fa46ca6a5255669;hb=e57f77dc13f5a295cf49a403da05770a68a6e22b;hp=0a7c49ea2a1d758c7daa174d58499bc555cddc8d;hpb=1213d49ca3df8f48360da857121805d088c13aab;p=jalview.git

diff --git a/src/jalview/gui/JvOptionPane.java b/src/jalview/gui/JvOptionPane.java
index 0a7c49e..7a5daf7 100644
--- a/src/jalview/gui/JvOptionPane.java
+++ b/src/jalview/gui/JvOptionPane.java
@@ -859,8 +859,9 @@ public class JvOptionPane extends JOptionPane
           break NOTNULL;
         }
 
-        // run through buttons for initialValue first so can set a final
-        // timeoutThreadF
+        // run through buttons for initialValue first so we can set (and start)
+        // a final timeoutThreadF to include (and interrupt) in the button
+        // actions
         Thread timeoutThread = null;
         for (int i = 0; i < options.length; i++)
         {
@@ -868,11 +869,10 @@ public class JvOptionPane extends JOptionPane
           JButton jb = buttons[i];
           if (o.equals(initialValue))
           {
-            initialValueButton = jb;
-            if (timeout > 0 && initialValueButton != null
-                    && initialValueButton instanceof JButton)
+            if (timeout > 0 && jb != null && jb instanceof JButton)
             {
-              Runnable timeoutClose = () -> {
+              // after timeout ms click the default button
+              timeoutThread = new Thread(() -> {
                 try
                 {
                   Thread.sleep(timeout);
@@ -882,13 +882,17 @@ public class JvOptionPane extends JOptionPane
                           "Dialog timeout interrupted.  Probably a button pressed.");
                 }
                 jb.doClick();
-              };
-              timeoutThread = new Thread(timeoutClose);
+              });
             }
+            initialValueButton = jb;
+            break;
           }
         }
         final Thread timeoutThreadF = timeoutThread;
-        timeoutThreadF.start();
+        if (timeoutThreadF != null)
+        {
+          timeoutThreadF.start();
+        }
 
         int[] buttonActions = { JOptionPane.YES_OPTION,
             JOptionPane.NO_OPTION, JOptionPane.CANCEL_OPTION };
@@ -1330,6 +1334,7 @@ public class JvOptionPane extends JOptionPane
 
     // A better hack which works is to create a new JFrame parent with
     // setAlwaysOnTop(true)
+    boolean parentOnTop = dialogParent.isAlwaysOnTop();
     dialogParent.setAlwaysOnTop(true);
     parentComponent = dialogParent;
 
@@ -1337,6 +1342,8 @@ public class JvOptionPane extends JOptionPane
             JOPTIONPANE_MESSAGETYPE, icon, options, initialValue, modal,
             buttons);
 
+    dialogParent.setAlwaysOnTop(parentOnTop);
+
     if (dispose)
     {
       dialogParent.setAlwaysOnTop(false);