X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FOverviewCanvas.java;h=7371eb5e0bf79a44aac37b9a081000d1a58df858;hb=2ff9268291ebf9d1d8d10c0108ea4f8b50c2885f;hp=997d214b5eafea5cfd0230922ca5d896a902e2ec;hpb=67affee2e65ca942447570c35526c04d64f41fe1;p=jalview.git

diff --git a/src/jalview/gui/OverviewCanvas.java b/src/jalview/gui/OverviewCanvas.java
index 997d214..7371eb5 100644
--- a/src/jalview/gui/OverviewCanvas.java
+++ b/src/jalview/gui/OverviewCanvas.java
@@ -21,26 +21,20 @@
 package jalview.gui;
 
 import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
 import jalview.renderer.OverviewRenderer;
+import jalview.renderer.OverviewResColourFinder;
 import jalview.viewmodel.OverviewDimensions;
 
-import java.awt.AlphaComposite;
 import java.awt.Color;
+import java.awt.Dimension;
 import java.awt.Graphics;
-import java.awt.Graphics2D;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
 import java.awt.image.BufferedImage;
 
 import javax.swing.JComponent;
-import javax.swing.Timer;
 
 public class OverviewCanvas extends JComponent
 {
-  private static final long RUNNING_TIME = 2000;
-
-  private static final int SPEED = 40;
-
   private static final Color TRANS_GREY = new Color(100, 100, 100, 25);
 
   // This is set true if the alignment view changes whilst
@@ -49,12 +43,12 @@ public class OverviewCanvas extends JComponent
 
   private volatile boolean updaterunning = false;
 
+  private boolean dispose = false;
+
   private BufferedImage miniMe;
 
   private BufferedImage lastMiniMe = null;
 
-  private BufferedImage veryLastMiniMe = null;
-
   // Can set different properties in this seqCanvas than
   // main visible SeqCanvas
   private SequenceRenderer sr;
@@ -67,11 +61,7 @@ public class OverviewCanvas extends JComponent
 
   private AlignViewportI av;
 
-  private float alpha = 0f;
-
-  private long startTime = -1;
-
-  private final Timer timer;
+  private OverviewResColourFinder cf;
 
   private ProgressPanel progressPanel;
 
@@ -84,40 +74,16 @@ public class OverviewCanvas extends JComponent
 
     sr = new SequenceRenderer(av);
     sr.renderGaps = false;
-    sr.forOverview = true;
     fr = new jalview.renderer.seqfeatures.FeatureRenderer(av);
 
-    setSize(od.getWidth(), od.getHeight());
-
-    timer = new Timer(SPEED, new ActionListener()
-    {
-
-      @Override
-      public void actionPerformed(ActionEvent e)
-      {
-        if (startTime < 0)
-        {
-          startTime = System.currentTimeMillis();
-        }
-        else
-        {
+    boolean useLegacy = Cache.getDefault(Preferences.USE_LEGACY_GAP, false);
+    Color gapCol = Cache.getDefaultColour(Preferences.GAP_COLOUR,
+            jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_GAP);
+    Color hiddenCol = Cache.getDefaultColour(Preferences.HIDDEN_COLOUR,
+            jalview.renderer.OverviewResColourFinder.OVERVIEW_DEFAULT_HIDDEN);
+    cf = new OverviewResColourFinder(useLegacy, gapCol, hiddenCol);
 
-          long time = System.currentTimeMillis();
-          long duration = time - startTime;
-          if (duration >= RUNNING_TIME)
-          {
-            startTime = -1;
-            ((Timer) e.getSource()).stop();
-            alpha = 0f;
-          }
-          else
-          {
-            alpha = 1f - ((float) duration / (float) RUNNING_TIME);
-          }
-          repaint();
-        }
-      }
-    });
+    setSize(od.getWidth(), od.getHeight());
   }
 
   /**
@@ -169,15 +135,19 @@ public class OverviewCanvas extends JComponent
           FeatureRenderer transferRenderer)
   {
     miniMe = null;
-    veryLastMiniMe = lastMiniMe;
 
     if (showSequenceFeatures)
     {
       fr.transferSettings(transferRenderer);
     }
 
-    or = new OverviewRenderer(sr, fr, od);
+    setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
+
+    or = new OverviewRenderer(fr, od, av.getAlignment(),
+            av.getResidueShading(), cf);
+
     or.addPropertyChangeListener(progressPanel);
+
     miniMe = or.draw(od.getRows(av.getAlignment()),
             od.getColumns(av.getAlignment()));
 
@@ -194,17 +164,19 @@ public class OverviewCanvas extends JComponent
     System.gc();
 
     or.removePropertyChangeListener(progressPanel);
+    or = null;
     if (restart)
     {
       restart = false;
-      draw(showSequenceFeatures, showAnnotation, transferRenderer);
+      if (!dispose)
+      {
+        draw(showSequenceFeatures, showAnnotation, transferRenderer);
+      }
     }
     else
     {
       updaterunning = false;
       lastMiniMe = miniMe;
-      alpha = 1f;
-      timer.start();
     }
   }
 
@@ -272,25 +244,8 @@ public class OverviewCanvas extends JComponent
       }
       else // not a resize
       {
-        if (alpha != 0) // this is a timer triggered dissolve
-        {
-          Graphics2D g2d = (Graphics2D) g.create();
-          
-          // draw the original image
-          g2d.drawImage(veryLastMiniMe, 0, 0, getWidth(), getHeight(),
-                  this);
-
-          // draw the new image on top with varying degrees of transparency
-          g2d.setComposite(AlphaComposite.SrcOver.derive(1f - alpha));
-          g2d.drawImage(lastMiniMe, 0, 0, getWidth(), getHeight(), this);
-
-          g2d.dispose();
-        }
-        else
-        {
-          // fall back to normal behaviour
-          g.drawImage(lastMiniMe, 0, 0, getWidth(), getHeight(), this);
-        }
+        // fall back to normal behaviour
+        g.drawImage(lastMiniMe, 0, 0, getWidth(), getHeight(), this);
       }
     }
 
@@ -298,4 +253,17 @@ public class OverviewCanvas extends JComponent
     g.setColor(Color.red);
     od.drawBox(g);
   }
+
+  public void dispose()
+  {
+    dispose = true;
+    synchronized (this)
+    {
+      restart = true;
+      if (or != null)
+      {
+        or.setRedraw(true);
+      }
+    }
+  }
 }