X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FOverviewCanvas.java;h=ed1497a50a2137e751a558867b6ba0f061ddf05b;hb=e04bcd38992def511190a30f98cb3db3a720e0fc;hp=987d6c154314af58e25a71c8be78e07470e53c17;hpb=fb548a8458941602b0b8b45da5aaf60206e10ec2;p=jalview.git

diff --git a/src/jalview/gui/OverviewCanvas.java b/src/jalview/gui/OverviewCanvas.java
index 987d6c1..ed1497a 100644
--- a/src/jalview/gui/OverviewCanvas.java
+++ b/src/jalview/gui/OverviewCanvas.java
@@ -21,7 +21,9 @@
 package jalview.gui;
 
 import jalview.api.AlignViewportI;
+import jalview.bin.Cache;
 import jalview.renderer.OverviewRenderer;
+import jalview.renderer.OverviewResColourFinder;
 import jalview.viewmodel.OverviewDimensions;
 
 import java.awt.Color;
@@ -57,6 +59,8 @@ public class OverviewCanvas extends JComponent
 
   private AlignViewportI av;
 
+  private OverviewResColourFinder cf;
+
   public OverviewCanvas(OverviewDimensions overviewDims,
           AlignViewportI alignvp)
   {
@@ -65,8 +69,14 @@ public class OverviewCanvas extends JComponent
 
     sr = new SequenceRenderer(av);
     sr.renderGaps = false;
-    // sr.forOverview = true;
     fr = new jalview.renderer.seqfeatures.FeatureRenderer(av);
+
+    boolean useLegacy = Cache.getDefault(Preferences.USE_LEGACY_GAP, false);
+    Color gapCol = Cache.getDefaultColour(Preferences.GAP_COLOUR,
+            Preferences.OVERVIEW_DEFAULT_GAP);
+    Color hiddenCol = Cache.getDefaultColour(Preferences.HIDDEN_COLOUR,
+            Preferences.OVERVIEW_DEFAULT_HIDDEN);
+    cf = new OverviewResColourFinder(useLegacy, gapCol, hiddenCol);
   }
 
   /**
@@ -127,7 +137,7 @@ public class OverviewCanvas extends JComponent
     setPreferredSize(new Dimension(od.getWidth(), od.getHeight()));
 
     or = new OverviewRenderer(fr, od, av.getAlignment(),
-            av.getResidueShading());
+            av.getResidueShading(), cf);
     miniMe = or.draw(od.getRows(av.getAlignment()),
             od.getColumns(av.getAlignment()));