X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FOverviewPanel.java;h=92451041b77ca2b784d38dd55d9e331c4ad67e72;hb=74d5ca6390288f6cd6cb445cccc728802806a29a;hp=faa94e9fc4cecdd0e9553a93b6a5ad683c191d27;hpb=3b5d07562d8974f2fde820a1390c404d8734ebeb;p=jalview.git diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java index faa94e9..9245104 100755 --- a/src/jalview/gui/OverviewPanel.java +++ b/src/jalview/gui/OverviewPanel.java @@ -20,17 +20,35 @@ */ package jalview.gui; +import jalview.api.AlignViewportI; +import jalview.api.AlignmentViewPanel; +import jalview.bin.Cache; +import jalview.renderer.OverviewRenderer; +import jalview.util.MessageManager; +import jalview.util.Platform; import jalview.viewmodel.OverviewDimensions; +import jalview.viewmodel.OverviewDimensionsHideHidden; +import jalview.viewmodel.OverviewDimensionsShowHidden; +import jalview.viewmodel.ViewportListenerI; import java.awt.BorderLayout; +import java.awt.Cursor; import java.awt.Dimension; +import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; import java.awt.event.ComponentAdapter; import java.awt.event.ComponentEvent; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; import java.awt.event.MouseMotionAdapter; +import java.beans.PropertyChangeEvent; +import java.beans.PropertyVetoException; +import javax.swing.JCheckBoxMenuItem; +import javax.swing.JInternalFrame; import javax.swing.JPanel; +import javax.swing.JPopupMenu; +import javax.swing.SwingUtilities; /** * Panel displaying an overview of the full alignment, with an interactive box @@ -39,15 +57,29 @@ import javax.swing.JPanel; * @author $author$ * @version $Revision$ */ -public class OverviewPanel extends JPanel implements Runnable +@SuppressWarnings("serial") +public class OverviewPanel extends JPanel + implements Runnable, ViewportListenerI { - private OverviewDimensions od; + protected OverviewDimensions od; - private OverviewCanvas oviewCanvas; + OverviewCanvas canvas; - private AlignViewport av; + protected AlignViewportI av; - private AlignmentPanel ap; + AlignmentViewPanel ap; + + protected JCheckBoxMenuItem displayToggle; + + protected boolean showHidden = true; + + protected boolean draggingBox = false; + + protected ProgressPanel progressPanel; + + private Dimension dim; + + private boolean showProgress = !Platform.isJS(); // Jalview.getInstance().getShowStatus() /** * Creates a new OverviewPanel object. @@ -55,29 +87,35 @@ public class OverviewPanel extends JPanel implements Runnable * @param alPanel * The alignment panel which is shown in the overview panel */ - public OverviewPanel(AlignmentPanel alPanel) + public OverviewPanel(AlignmentViewPanel alPanel, Dimension dim) { - this.av = alPanel.av; + this.av = alPanel.getAlignViewport(); this.ap = alPanel; + this.dim = dim; - od = new OverviewDimensions(av.getRanges(), - (av.isShowAnnotation() && av - .getAlignmentConservationAnnotation() != null)); - - oviewCanvas = new OverviewCanvas(od, av, ap); + showHidden = Cache.getDefault(Preferences.SHOW_OV_HIDDEN_AT_START, + false); + createOverviewDimensions(); setLayout(new BorderLayout()); - add(oviewCanvas, BorderLayout.CENTER); + progressPanel = new ProgressPanel(OverviewRenderer.UPDATE, + MessageManager.getString("label.oview_calc"), getWidth()); + if (showProgress) // BH 2019 + { + add(progressPanel, BorderLayout.SOUTH); + } + canvas = new OverviewCanvas(this, od, av, + showProgress ? progressPanel : null); + canvas.setPreferredSize(canvas.getSize()); + add(canvas, BorderLayout.CENTER); + + av.getRanges().addPropertyChangeListener(this); addComponentListener(new ComponentAdapter() { @Override public void componentResized(ComponentEvent evt) { - if ((getWidth() != od.getWidth()) - || (getHeight() != (od.getHeight()))) - { - updateOverviewImage(); - } + resizePanel(); } }); @@ -86,12 +124,42 @@ public class OverviewPanel extends JPanel implements Runnable @Override public void mouseDragged(MouseEvent evt) { - if (!av.getWrapAlignment()) + if (!SwingUtilities.isRightMouseButton(evt)) { - od.updateViewportFromMouse(evt.getX(), evt.getY(), av - .getAlignment().getHiddenSequences(), av - .getColumnSelection(), av.getRanges()); - ap.setScrollValues(od.getScrollCol(), od.getScrollRow()); + if (draggingBox) + { + // set the mouse position as a fixed point in the box + // and drag relative to that position + od.adjustViewportFromMouse(evt.getX(), evt.getY(), + av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + } + else + { + od.updateViewportFromMouse(evt.getX(), evt.getY(), + av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + } + } + } + + @Override + public void mouseMoved(MouseEvent evt) + { + if (od.isPositionInBox(evt.getX(), evt.getY())) + { + /* + * using HAND_CURSOR rather than DRAG_CURSOR + * as the latter is not supported on Mac + */ + getParent().setCursor( + Cursor.getPredefinedCursor(Cursor.HAND_CURSOR)); + } + else + { + // reset cursor + getParent().setCursor( + Cursor.getPredefinedCursor(Cursor.CROSSHAIR_CURSOR)); } } }); @@ -101,50 +169,205 @@ public class OverviewPanel extends JPanel implements Runnable @Override public void mousePressed(MouseEvent evt) { - if (!av.getWrapAlignment()) + if (Platform.isWinRightButton(evt)) + { + showPopupMenu(evt); + return; + } + if (SwingUtilities.isRightMouseButton(evt)) + { + return; + } + // don't do anything if the mouse press is in the overview's box + // (wait to see if it's a drag instead) + // otherwise update the viewport + if (!od.isPositionInBox(evt.getX(), evt.getY())) + { + draggingBox = false; + + // display drag cursor at mouse position + setCursor(Cursor.getPredefinedCursor(Cursor.MOVE_CURSOR)); + + od.updateViewportFromMouse(evt.getX(), evt.getY(), + av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + getParent().setCursor( + Cursor.getPredefinedCursor(Cursor.HAND_CURSOR)); + } + else + { + draggingBox = true; + od.setDragPoint(evt.getX(), evt.getY(), + av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + } + } + + @Override + public void mouseClicked(MouseEvent evt) + { + if (SwingUtilities.isRightMouseButton(evt)) { - od.updateViewportFromMouse(evt.getX(), evt.getY(), av - .getAlignment().getHiddenSequences(), av - .getColumnSelection(), av.getRanges()); - ap.setScrollValues(od.getScrollCol(), od.getScrollRow()); + showPopupMenu(evt); } } + + @Override + public void mouseReleased(MouseEvent evt) + { + draggingBox = false; + } }); + } + protected void resizePanel() + { + int ph = (progressPanel.getParent() == null ? 0 + : progressPanel.getHeight()); + // Resize is called on the initial display of the overview. + // This code adjusts sizes to account for the progress bar if it has not + // already been accounted for, which triggers another resize call for + // the correct sizing, at which point the overview image is updated. + // (This avoids a double recalculation of the image.) + if (getWidth() == od.getWidth() && getHeight() == od.getHeight() + ph) + { + if (canvas.lastMiniMe == null) + { + updateOverviewImage(); + } + } + else + { + int w = getWidth(); + int h = getHeight(); + if ((w > 0) && (h > 0)) + { + if (dim != null) + { + dim.setSize(w, h - ph); + } + od.setWidth(w); + od.setHeight(h - ph); + updateOverviewImage(); + } + } + } + + /** + * Create the appropriate type of OverViewDimensions, with the desired size. + */ + private void createOverviewDimensions() + { + boolean showAnnotation = (av.isShowAnnotation() + && av.getAlignmentConservationAnnotation() != null); + if (showHidden) + { + od = new OverviewDimensionsShowHidden(av.getRanges(), showAnnotation, + dim); + } + else + { + od = new OverviewDimensionsHideHidden(av.getRanges(), showAnnotation, + dim); + } + + } + + /** + * Displays the popup menu and acts on user input + */ + protected void showPopupMenu(MouseEvent e) + { + JPopupMenu popup = new JPopupMenu(); + ActionListener menuListener = new ActionListener() + { + @Override + public void actionPerformed(ActionEvent event) + { + // switch on/off the hidden columns view + toggleHiddenColumns(); + displayToggle.setSelected(showHidden); + } + }; + displayToggle = new JCheckBoxMenuItem( + MessageManager.getString("label.togglehidden")); + displayToggle.setEnabled(true); + displayToggle.setSelected(showHidden); + popup.add(displayToggle); + displayToggle.addActionListener(menuListener); + popup.show(this, e.getX(), e.getY()); + } + + /** + * Toggle overview display between showing hidden columns and hiding hidden + * columns + */ + protected void toggleHiddenColumns() + { + showHidden = !showHidden; + createOverviewDimensions(); + canvas.resetOviewDims(od); updateOverviewImage(); + setBoxPosition(); } /** - * Updates the overview image when the related alignment panel is updated + * Updates the overview image when the related alignment panel is updated. + * + * Cases: + * + * AlignFrame.setFeatureGroupState + * + * AlignmentPanel.paintAlignment(true,...) (117 references) + * + * OverviewPanel..componentResized() OverviewPanel.toggleHiddenColumns() + * + * PopupMenu for action.reveal_sequences, action.reveal_all + * + * SliderPanel.mouseReleased() + * */ public void updateOverviewImage() { + if (canvas == null) + { + /* + * panel has been disposed + */ + return; + } + + int ph = (progressPanel.getParent() == null ? 0 + : progressPanel.getHeight()); + if ((getWidth() > 0) && (getHeight() > 0)) { od.setWidth(getWidth()); - od.setHeight(getHeight()); + od.setHeight(getHeight() - ph); } - setPreferredSize(new Dimension(od.getWidth(), od.getHeight())); + setPreferredSize(new Dimension(od.getWidth(), od.getHeight() + ph)); - if (oviewCanvas.restartDraw()) + if (canvas.restartDraw()) { return; } Thread thread = new Thread(this); thread.start(); - repaint(); - } @Override public void run() { - oviewCanvas.draw(av.isShowSequenceFeatures(), - (av.isShowAnnotation() && av - .getAlignmentConservationAnnotation() != null)); - setBoxPosition(); + if (canvas != null) + { + setBoxPosition(); + canvas.draw(av.isShowSequenceFeatures(), + (av.isShowAnnotation() + && av.getAlignmentConservationAnnotation() != null), + ap.getFeatureRenderer()); + } } /** @@ -152,10 +375,70 @@ public class OverviewPanel extends JPanel implements Runnable * changed * */ - public void setBoxPosition() + private void setBoxPositionOnly() + { + if (od != null) + { + od.updateBox(); + int oldX = od.getBoxX(); + int oldY = od.getBoxY(); + int oldWidth = od.getBoxWidth(); + int oldHeight = od.getBoxHeight(); + od.setBoxPosition(av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + repaint(oldX - 1, oldY - 1, oldWidth + 2, oldHeight + 2); + repaint(od.getBoxX(), od.getBoxY(), od.getBoxWidth(), + od.getBoxHeight()); + } + } + + private void setBoxPosition() + { + if (od != null) + { + od.setBoxPosition(av.getAlignment().getHiddenSequences(), + av.getAlignment().getHiddenColumns()); + repaint(); + } + } + + @Override + public void propertyChange(PropertyChangeEvent evt) + { + setBoxPositionOnly(); + } + + /** + * Removes this object as a property change listener, and nulls references + */ + protected void dispose() { - od.setBoxPosition(av.getAlignment() - .getHiddenSequences(), av.getColumnSelection(), av.getRanges()); - repaint(); + try + { + if (av != null) + { + av.getRanges().removePropertyChangeListener(this); + } + + canvas.dispose(); + + /* + * close the parent frame (which also removes it from the + * Desktop Windows menu) + */ + ((JInternalFrame) SwingUtilities + .getAncestorOfClass(JInternalFrame.class, (this))) + .setClosed(true); + } catch (PropertyVetoException e) + { + // ignore + } finally + { + progressPanel = null; + av = null; + canvas = null; + ap = null; + od = null; + } } }