X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FOverviewPanel.java;h=a35966d7f1dc4ddbb18da52d81ad486a9700f7ba;hb=74333501ca7e85ea8f5d6f6d7c6787cf9d5e7c0e;hp=3662ec298f88f3d1b8293faf61951b5f37b92c3e;hpb=9c5d69ef1e102b1eac18ec13c362522f40c9000d;p=jalview.git

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index 3662ec2..a35966d 100755
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -281,13 +281,13 @@ public class OverviewPanel extends JPanel implements Runnable
             lastrow = (int)(row*sampleRow);
             lastcol = (int)(col*sampleCol);
 
-            color = sr.getResidueBoxColour(
+            if(av.alignment.getSequenceAt(lastrow).getLength()>lastcol)
+            {
+             color = sr.getResidueBoxColour(
                 av.alignment.getSequenceAt(lastrow), lastcol);
 
-            if(av.showSequenceFeatures)
-            {
-              color = fr.findFeatureColour(color,
-                                                       av.alignment.getSequenceAt(lastrow),
+             if(av.showSequenceFeatures)
+                  color = fr.findFeatureColour(color,  av.alignment.getSequenceAt(lastrow),
                                                        lastcol);
             }