X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FOverviewPanel.java;h=bd9e241663206b59a162b78b2a93852abdf69b8e;hb=20dd6fc13a9d903dc580939e7f2722bc9b043c4f;hp=bed9de1e113bd1c1422f6ca916022a3c55a6c638;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/gui/OverviewPanel.java b/src/jalview/gui/OverviewPanel.java
index bed9de1..bd9e241 100755
--- a/src/jalview/gui/OverviewPanel.java
+++ b/src/jalview/gui/OverviewPanel.java
@@ -20,12 +20,20 @@
  */
 package jalview.gui;
 
+import jalview.datamodel.SequenceI;
 import jalview.renderer.AnnotationRenderer;
 
-import java.awt.*;
-import java.awt.event.*;
-import java.awt.image.*;
-import javax.swing.*;
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.Graphics;
+import java.awt.event.ComponentAdapter;
+import java.awt.event.ComponentEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseMotionAdapter;
+import java.awt.image.BufferedImage;
+
+import javax.swing.JPanel;
 
 /**
  * DOCUMENT ME!
@@ -135,7 +143,7 @@ public class OverviewPanel extends JPanel implements Runnable
       @Override
       public void mouseDragged(MouseEvent evt)
       {
-        if (!av.wrapAlignment)
+        if (!av.getWrapAlignment())
         {
           // TODO: feature: jv2.5 detect shift drag and update selection from
           // it.
@@ -151,7 +159,7 @@ public class OverviewPanel extends JPanel implements Runnable
       @Override
       public void mousePressed(MouseEvent evt)
       {
-        if (!av.wrapAlignment)
+        if (!av.getWrapAlignment())
         {
           boxX = evt.getX();
           boxY = evt.getY();
@@ -284,7 +292,9 @@ public class OverviewPanel extends JPanel implements Runnable
     int lastcol = -1, lastrow = -1;
     int color = Color.white.getRGB();
     int row, col;
-    jalview.datamodel.SequenceI seq;
+    SequenceI seq;
+    final boolean hasHiddenRows = av.hasHiddenRows(), hasHiddenCols = av
+            .hasHiddenColumns();
     boolean hiddenRow = false;
     for (row = 0; row < sequencesHeight; row++)
     {
@@ -302,7 +312,7 @@ public class OverviewPanel extends JPanel implements Runnable
       lastrow = (int) (row * sampleRow);
 
       hiddenRow = false;
-      if (av.hasHiddenRows())
+      if (hasHiddenRows)
       {
         seq = av.getAlignment().getHiddenSequences()
                 .getHiddenSequence(lastrow);
@@ -355,7 +365,7 @@ public class OverviewPanel extends JPanel implements Runnable
         }
 
         if (hiddenRow
-                || (av.hasHiddenColumns() && !av.getColumnSelection()
+                || (hasHiddenCols && !av.getColumnSelection()
                         .isVisible(lastcol)))
         {
           color = new Color(color).darker().darker().getRGB();