X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPCAPanel.java;h=e6b6b83ddf2a3c441271fbf1589f7f7938231dfe;hb=7f3e371b7fbae94e9b731956cbdebc866742c692;hp=6c76c3e42fe251ac4ea127d85ddccf3c96ace4b8;hpb=9a20ebe6844fd13b704e5b73fe752bd00230aba6;p=jalview.git

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index 6c76c3e..e6b6b83 100644
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -24,7 +24,7 @@ import jalview.analysis.scoremodels.ScoreModels;
 import jalview.api.AlignViewportI;
 import jalview.api.analysis.ScoreModelI;
 import jalview.api.analysis.SimilarityParamsI;
-import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
@@ -122,8 +122,8 @@ public class PCAPanel extends GPCAPanel
 
     ScoreModelI scoreModel = ScoreModels.getInstance()
             .getScoreModel(modelName, ap);
-    setPcaModel(new PCAModel(seqstrings, seqs, nucleotide, scoreModel,
-            params));
+    setPcaModel(
+            new PCAModel(seqstrings, seqs, nucleotide, scoreModel, params));
     PaintRefresher.Register(this, av.getSequenceSetId());
 
     setRotatableCanvas(new RotatableCanvas(alignPanel));
@@ -297,7 +297,7 @@ public class PCAPanel extends GPCAPanel
     // JAL-2647 disabled after load from project (until save to project done)
     if (getPcaModel().getInputData() == null)
     {
-      Cache.log.info(
+      Console.info(
               "Unexpected call to originalSeqData_actionPerformed - should have hidden this menu action.");
       return;
     }
@@ -426,9 +426,9 @@ public class PCAPanel extends GPCAPanel
       @Override
       public void exportImage(Graphics g) throws Exception
       {
-    	RotatableCanvas canvas = getRotatableCanvas();
-    	canvas.drawBackground(g);
-    	canvas.drawScene(g);
+        RotatableCanvas canvas = getRotatableCanvas();
+        canvas.drawBackground(g);
+        canvas.drawScene(g);
         if (canvas.drawAxes)
         {
           canvas.drawAxes(g);
@@ -621,7 +621,8 @@ public class PCAPanel extends GPCAPanel
           final IProgressIndicatorHandler handler)
   {
     progressBar.registerHandler(id, handler);
-    // if (progressBarHandlers == null || !progressBars.contains(Long.valueOf(id)))
+    // if (progressBarHandlers == null ||
+    // !progressBars.contains(Long.valueOf(id)))
     // {
     // throw new
     // Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));