X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPCAPanel.java;h=e6b6b83ddf2a3c441271fbf1589f7f7938231dfe;hb=7f3e371b7fbae94e9b731956cbdebc866742c692;hp=df0cd03f3dbff3aba033a66164188d38df19f75c;hpb=c25cfde239527da78fecce55a877330afa90701d;p=jalview.git

diff --git a/src/jalview/gui/PCAPanel.java b/src/jalview/gui/PCAPanel.java
index df0cd03..e6b6b83 100644
--- a/src/jalview/gui/PCAPanel.java
+++ b/src/jalview/gui/PCAPanel.java
@@ -24,12 +24,14 @@ import jalview.analysis.scoremodels.ScoreModels;
 import jalview.api.AlignViewportI;
 import jalview.api.analysis.ScoreModelI;
 import jalview.api.analysis.SimilarityParamsI;
-import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
 import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SequenceI;
+import jalview.gui.ImageExporter.ImageWriterI;
+import jalview.gui.JalviewColourChooser.ColourChooserListener;
 import jalview.jbgui.GPCAPanel;
 import jalview.math.RotatableMatrix.Axis;
 import jalview.util.ImageMaker;
@@ -49,7 +51,6 @@ import java.awt.print.PrinterException;
 import java.awt.print.PrinterJob;
 
 import javax.swing.ButtonGroup;
-import javax.swing.JColorChooser;
 import javax.swing.JMenuItem;
 import javax.swing.JRadioButtonMenuItem;
 import javax.swing.event.InternalFrameAdapter;
@@ -121,8 +122,8 @@ public class PCAPanel extends GPCAPanel
 
     ScoreModelI scoreModel = ScoreModels.getInstance()
             .getScoreModel(modelName, ap);
-    setPcaModel(new PCAModel(seqstrings, seqs, nucleotide, scoreModel,
-            params));
+    setPcaModel(
+            new PCAModel(seqstrings, seqs, nucleotide, scoreModel, params));
     PaintRefresher.Register(this, av.getSequenceSetId());
 
     setRotatableCanvas(new RotatableCanvas(alignPanel));
@@ -130,8 +131,6 @@ public class PCAPanel extends GPCAPanel
 
     addKeyListener(getRotatableCanvas());
     validate();
-
-    this.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
   }
 
   /**
@@ -141,20 +140,29 @@ public class PCAPanel extends GPCAPanel
   protected void close_actionPerformed()
   {
     setPcaModel(null);
+    if (this.rc != null)
+    {
+      this.rc.sequencePoints = null;
+      this.rc.setAxisEndPoints(null);
+      this.rc = null;
+    }
   }
 
   @Override
   protected void bgcolour_actionPerformed()
   {
-    Color col = JColorChooser.showDialog(this,
-            MessageManager.getString("label.select_background_colour"),
-            getRotatableCanvas().getBgColour());
-
-    if (col != null)
+    String ttl = MessageManager.getString("label.select_background_colour");
+    ColourChooserListener listener = new ColourChooserListener()
     {
-      getRotatableCanvas().setBgColour(col);
-    }
-    getRotatableCanvas().repaint();
+      @Override
+      public void colourSelected(Color c)
+      {
+        rc.setBgColour(c);
+        rc.repaint();
+      }
+    };
+    JalviewColourChooser.showColourChooser(this, ttl, rc.getBgColour(),
+            listener);
   }
 
   /**
@@ -202,6 +210,7 @@ public class PCAPanel extends GPCAPanel
               MessageManager.formatMessage("label.calc_title", "PCA",
                       getPcaModel().getScoreModelName()),
               475, 450);
+      this.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT));
     }
     working = false;
   }
@@ -288,7 +297,7 @@ public class PCAPanel extends GPCAPanel
     // JAL-2647 disabled after load from project (until save to project done)
     if (getPcaModel().getInputData() == null)
     {
-      Cache.log.info(
+      Console.info(
               "Unexpected call to originalSeqData_actionPerformed - should have hidden this menu action.");
       return;
     }
@@ -408,59 +417,27 @@ public class PCAPanel extends GPCAPanel
     }
   }
 
-  /**
-   * Handler for 'Save as EPS' option
-   */
-  @Override
-  protected void eps_actionPerformed()
-  {
-    makePCAImage(ImageMaker.TYPE.EPS);
-  }
-
-  /**
-   * Handler for 'Save as PNG' option
-   */
-  @Override
-  protected void png_actionPerformed()
-  {
-    makePCAImage(ImageMaker.TYPE.PNG);
-  }
-
-  void makePCAImage(ImageMaker.TYPE type)
+  public void makePCAImage(ImageMaker.TYPE type)
   {
     int width = getRotatableCanvas().getWidth();
     int height = getRotatableCanvas().getHeight();
-
-    ImageMaker im;
-
-    switch (type)
-    {
-    case PNG:
-      im = new ImageMaker(this, ImageMaker.TYPE.PNG,
-              "Make PNG image from PCA", width, height, null, null, null, 0,
-              false);
-      break;
-    case EPS:
-      im = new ImageMaker(this, ImageMaker.TYPE.EPS,
-              "Make EPS file from PCA", width, height, null,
-              this.getTitle(), null, 0, false);
-      break;
-    default:
-      im = new ImageMaker(this, ImageMaker.TYPE.SVG,
-              "Make SVG file from PCA", width, height, null,
-              this.getTitle(), null, 0, false);
-    }
-
-    if (im.getGraphics() != null)
+    ImageWriterI writer = new ImageWriterI()
     {
-      getRotatableCanvas().drawBackground(im.getGraphics());
-      getRotatableCanvas().drawScene(im.getGraphics());
-      if (getRotatableCanvas().drawAxes)
+      @Override
+      public void exportImage(Graphics g) throws Exception
       {
-        getRotatableCanvas().drawAxes(im.getGraphics());
+        RotatableCanvas canvas = getRotatableCanvas();
+        canvas.drawBackground(g);
+        canvas.drawScene(g);
+        if (canvas.drawAxes)
+        {
+          canvas.drawAxes(g);
+        }
       }
-      im.writeImage();
-    }
+    };
+    String pca = MessageManager.getString("label.pca");
+    ImageExporter exporter = new ImageExporter(writer, null, type, pca);
+    exporter.doExport(null, this, width, height, pca);
   }
 
   @Override
@@ -508,11 +485,7 @@ public class PCAPanel extends GPCAPanel
         @Override
         public void actionPerformed(ActionEvent evt)
         {
-          getRotatableCanvas().setApplyToAllViews(false);
-          getRotatableCanvas().av = panel.av;
-          getRotatableCanvas().ap = panel;
-          PaintRefresher.Register(PCAPanel.this,
-                  panel.av.getSequenceSetId());
+          selectAssociatedView(panel);
         }
       });
 
@@ -605,11 +578,11 @@ public class PCAPanel extends GPCAPanel
     // }
     //
     // JPanel progressPanel;
-    // Long lId = new Long(id);
+    // Long lId = Long.valueOf(id);
     // GridLayout layout = (GridLayout) statusPanel.getLayout();
     // if (progressBars.get(lId) != null)
     // {
-    // progressPanel = (JPanel) progressBars.get(new Long(id));
+    // progressPanel = (JPanel) progressBars.get(Long.valueOf(id));
     // statusPanel.remove(progressPanel);
     // progressBars.remove(lId);
     // progressPanel = null;
@@ -648,13 +621,14 @@ public class PCAPanel extends GPCAPanel
           final IProgressIndicatorHandler handler)
   {
     progressBar.registerHandler(id, handler);
-    // if (progressBarHandlers == null || !progressBars.contains(new Long(id)))
+    // if (progressBarHandlers == null ||
+    // !progressBars.contains(Long.valueOf(id)))
     // {
     // throw new
     // Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));
     // }
-    // progressBarHandlers.put(new Long(id), handler);
-    // final JPanel progressPanel = (JPanel) progressBars.get(new Long(id));
+    // progressBarHandlers.put(Long.valueOf(id), handler);
+    // final JPanel progressPanel = (JPanel) progressBars.get(Long.valueOf(id));
     // if (handler.canCancel())
     // {
     // JButton cancel = new JButton(
@@ -778,4 +752,21 @@ public class PCAPanel extends GPCAPanel
   {
     this.top = top;
   }
+
+  /**
+   * set the associated view for this PCA.
+   * 
+   * @param panel
+   */
+  public void selectAssociatedView(AlignmentPanel panel)
+  {
+    getRotatableCanvas().setApplyToAllViews(false);
+
+    ap = panel;
+    av = panel.av;
+
+    getRotatableCanvas().av = panel.av;
+    getRotatableCanvas().ap = panel;
+    PaintRefresher.Register(PCAPanel.this, panel.av.getSequenceSetId());
+  }
 }