X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPaintRefresher.java;h=b6d5a4177f94ec6e0916f984d69151e0e39a1b27;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=91a0978eacd4691272c1a1401e51a730aa34379b;hpb=f52f7b378972cc884b5d3e5cc250f89667f558f7;p=jalview.git
diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java
index 91a0978..b6d5a41 100755
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
@@ -25,8 +28,9 @@ import java.awt.*;
import jalview.datamodel.*;
/**
- * DOCUMENT ME!
- *
+ * Route datamodel/view update events for a sequence set to any display
+ * components involved TODO: JV3 refactor to abstract gui/view package
+ *
* @author $author$
* @version $Revision$
*/
@@ -36,7 +40,7 @@ public class PaintRefresher
/**
* DOCUMENT ME!
- *
+ *
* @param comp
* DOCUMENT ME!
* @param al
@@ -180,14 +184,18 @@ public class PaintRefresher
{
if (i < comp.getHeight())
{
- // TODO: the following does not trigger any recalculation of height/etc, or maintain the dataset
- if (comp.getDataset()!=source.getDataset())
+ // TODO: the following does not trigger any recalculation of
+ // height/etc, or maintain the dataset
+ if (comp.getDataset() != source.getDataset())
{
- // raise an implementation warning here - not sure if this situation will ever occur
- System.err.println("IMPLEMENTATION PROBLEM: DATASET out of sync due to an insert whilst calling PaintRefresher.validateSequences(AlignmentI, ALignmentI)");
+ // raise an implementation warning here - not sure if this situation
+ // will ever occur
+ System.err
+ .println("IMPLEMENTATION PROBLEM: DATASET out of sync due to an insert whilst calling PaintRefresher.validateSequences(AlignmentI, ALignmentI)");
}
List alsq;
- synchronized (alsq=comp.getSequences()) {
+ synchronized (alsq = comp.getSequences())
+ {
alsq.add(i, a1[i]);
}
}
@@ -234,9 +242,17 @@ public class PaintRefresher
static AlignmentPanel[] getAssociatedPanels(String id)
{
- if (components==null) { return new AlignmentPanel[0]; };
+ if (components == null)
+ {
+ return new AlignmentPanel[0];
+ }
+ ;
Vector comps = (Vector) components.get(id);
- if (comps==null) { return new AlignmentPanel[0]; };
+ if (comps == null)
+ {
+ return new AlignmentPanel[0];
+ }
+ ;
Vector tmp = new Vector();
int i, iSize = comps.size();
for (i = 0; i < iSize; i++)