X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPaintRefresher.java;h=d28372050437191eada0e656bc64ea428e95eaf1;hb=77c35fa912621cbadcf5ec74da4c6d45de6322e1;hp=1def794bd2bb46503c4b22903c06300925127b3d;hpb=f5a779f10f361429eb273c55d66064a8cb1bf4e2;p=jalview.git

diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java
index 1def794..d283720 100755
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -111,11 +111,7 @@ public class PaintRefresher
           continue;
         }
 
-        if (!comp.isValid())
-        {
-          comps.removeElement(comp);
-        }
-        else if(validateSequences
+        if(validateSequences
                 && comp instanceof AlignmentPanel
                 && source instanceof AlignmentPanel )
         {
@@ -147,6 +143,10 @@ public class PaintRefresher
         a2 = comp.getSequencesArray();
 
       int i, iSize=a1.length, j, jSize=a2.length;
+
+      if(iSize == jSize)
+        return;
+
       boolean exists = false;
       for(i=0; i<iSize; i++)
       {
@@ -196,4 +196,23 @@ public class PaintRefresher
         }
       }
     }
+
+    static AlignmentPanel [] getAssociatedPanels(String id)
+    {
+      Vector comps = (Vector)components.get(id);
+      Vector tmp = new Vector();
+      int i, iSize = comps.size();
+      for (i = 0; i < iSize; i++)
+      {
+        if (comps.elementAt(i) instanceof AlignmentPanel)
+        {
+          tmp.addElement(((AlignmentPanel)comps.elementAt(i)));
+        }
+      }
+      AlignmentPanel [] result = new AlignmentPanel[tmp.size()];
+      tmp.toArray(result);
+
+      return result;
+    }
+
 }