X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;h=69b6ba634b5e687ba5da95b528e0ba79f1304473;hb=2799bb913bbda0455b0f5f43737da678794e1961;hp=82f0120d31c441d3ae8062596940729232a9fc79;hpb=49967bcd77331a51ed428544d06fa3deb8961b17;p=jalview.git

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 82f0120..69b6ba6 100755
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -99,13 +99,8 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
         totscore = totscore + scores[i][j];
 
         textarea.append(as.getOutput());
-        seq = new Sequence(as.getAlignedSeq1().getName(), as.getAStr1(), as
-                .getAlignedSeq1().getStart(), as.getAlignedSeq1().getEnd());
-        sequences.add(seq);
-
-        seq = new Sequence(as.getAlignedSeq2().getName(), as.getAStr2(), as
-                .getAlignedSeq2().getStart(), as.getAlignedSeq2().getEnd());
-        sequences.add(seq);
+        sequences.add(as.getAlignedSeq1());
+        sequences.add(as.getAlignedSeq1());
       }
     }