X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;h=b5b6ffc3df2bd4a910912ae2953b5d155a63963b;hb=c932f0e85a8852824cdd8ce790af68682732c85c;hp=c4b53675abfa3830ed371f5826ebe175d5207ba6;hpb=8bcbf5c32f8091f2d5871e7eec4d4727c26d5c63;p=jalview.git

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index c4b5367..b5b6ffc 100755
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -104,7 +104,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
         if (!first)
         {
-          System.out.println(DASHES);
+          jalview.bin.Console.outPrintln(DASHES);
           textarea.append(DASHES);
         }
         first = false;
@@ -139,7 +139,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
     for (int i = 0; i < seqs.length; i++)
     {
-      System.out.println(
+      jalview.bin.Console.outPrintln(
               String.format("%3d %s", i + 1, seqs[i].getDisplayId(true)));
     }
 
@@ -151,7 +151,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
     {
       System.out.print(String.format("%7d", i + 1));
     }
-    System.out.println();
+    jalview.bin.Console.outPrintln();
 
     for (int i = 0; i < seqs.length; i++)
     {
@@ -163,10 +163,10 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
          */
         System.out.print(String.format("%7.3f", scores[i][j] / totscore));
       }
-      System.out.println();
+      jalview.bin.Console.outPrintln();
     }
 
-    System.out.println("\n");
+    jalview.bin.Console.outPrintln("\n");
   }
 
   /**