X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;h=bc2c27cd19f1f1db7333b63a94012403a17f69dc;hb=59390e2e3c5d2956d5bf7b21ab79bdcbdf1849b7;hp=69b6ba634b5e687ba5da95b528e0ba79f1304473;hpb=4e7511345e2d3b5c0ec47c280bf5582073c86c1e;p=jalview.git

diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java
index 69b6ba6..bc2c27c 100755
--- a/src/jalview/gui/PairwiseAlignPanel.java
+++ b/src/jalview/gui/PairwiseAlignPanel.java
@@ -100,7 +100,7 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel
 
         textarea.append(as.getOutput());
         sequences.add(as.getAlignedSeq1());
-        sequences.add(as.getAlignedSeq1());
+        sequences.add(as.getAlignedSeq2());
       }
     }