X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPairwiseAlignPanel.java;h=f75407caef708312bc990a4f51e0ac68d529b478;hb=004a35d07335854184fdd335920b7210eebd66d9;hp=ee89737da3fe335a64c17e2b85ae373176c935cd;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git diff --git a/src/jalview/gui/PairwiseAlignPanel.java b/src/jalview/gui/PairwiseAlignPanel.java index ee89737..f75407c 100755 --- a/src/jalview/gui/PairwiseAlignPanel.java +++ b/src/jalview/gui/PairwiseAlignPanel.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -107,13 +107,13 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel if (count > 2) { - System.out - .println("Pairwise alignment scaled similarity score matrix\n"); + System.out.println( + "Pairwise alignment scaled similarity score matrix\n"); for (int i = 0; i < count; i++) { - jalview.util.Format.print(System.out, "%s \n", ("" + i) + " " - + seqs[i].getName()); + jalview.util.Format.print(System.out, "%s \n", + ("" + i) + " " + seqs[i].getName()); } System.out.println("\n"); @@ -122,8 +122,8 @@ public class PairwiseAlignPanel extends GPairwiseAlignPanel { for (int j = 0; j < i; j++) { - jalview.util.Format.print(System.out, "%7.3f", scores[i][j] - / totscore); + jalview.util.Format.print(System.out, "%7.3f", + scores[i][j] / totscore); } }