X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPopupMenu.java;fp=src%2Fjalview%2Fgui%2FPopupMenu.java;h=2473ba9ae2957d4c1797f9cd82fe55c0a4a99b2c;hb=refs%2Fheads%2Ffeatures%2FJAL-2446NCList;hp=3e2eba92d90392cb94821926a0398d3bab00cfd1;hpb=e327ac5df98f528afeb347ac9a79085ad0d0975b;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 3e2eba9..2473ba9 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1944,8 +1944,7 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
       if (start <= end)
       {
         seqs.add(sg.getSequenceAt(i).getDatasetSequence());
-        features.add(
-                new SequenceFeature(null, null, null, start, end, null));
+        features.add(new SequenceFeature(null, null, start, end, null));
       }
     }
 
@@ -1958,7 +1957,8 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
               .amendFeatures(seqs, features, true, ap))
       {
         ap.alignFrame.setShowSeqFeatures(true);
-        ap.highlightSearchResults(null);
+        ap.av.setSearchResults(null); // clear highlighting
+        ap.repaint(); // draw new/amended features
       }
     }
   }