X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=1df8041031263e0fd2deb92cf1a89e476087e7e3;hb=be707dc4d1ea70abc29cbe3fd4489be7bb692117;hp=ef87c2fdda491c525f437144d17ea141b44e5b42;hpb=bf137b6f217be9b0ffa1d6e8a71fdc563f17ef89;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index ef87c2f..1df8041 100755
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -85,6 +85,7 @@ public class PopupMenu
   JMenu structureMenu = new JMenu();
   JMenu viewStructureMenu = new JMenu();
   JMenu colStructureMenu = new JMenu();
+  JMenuItem editSequence = new JMenuItem();
 
   /**
    * Creates a new PopupMenu object.
@@ -566,6 +567,14 @@ public class PopupMenu
     structureMenu.setText("Structure");
     viewStructureMenu.setText("View Structure");
     colStructureMenu.setText("Colour By Structure");
+    editSequence.setText("Edit Sequence...");
+    editSequence.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        editSequence_actionPerformed(actionEvent);
+      }
+    });
 
     add(groupMenu);
 
@@ -616,6 +625,7 @@ public class PopupMenu
     colourMenu.add(conservationMenuItem);
     editMenu.add(copy);
     editMenu.add(cut);
+    editMenu.add(editSequence);
     editMenu.add(upperCase);
     editMenu.add(lowerCase);
     editMenu.add(toggle);
@@ -1403,4 +1413,39 @@ public class PopupMenu
     sequence.addAlignmentAnnotation(an);
 
     }
+
+  public void editSequence_actionPerformed(ActionEvent actionEvent)
+  {
+      SequenceGroup sg = ap.av.getSelectionGroup();
+
+      if(sg!=null)
+      {
+        if (sequence == null)
+          sequence = (Sequence) sg.getSequenceAt(0);
+
+        EditNameDialog dialog = new EditNameDialog(
+            sequence.getSequenceAsString(
+                sg.getStartRes(),
+                sg.getEndRes() + 1),
+            null,
+            "Edit Sequence ",
+            null,
+            "Edit Sequence");
+
+        if (dialog.accept)
+        {
+          EditCommand editCommand = new EditCommand(
+              "Edit Sequences", EditCommand.REPLACE,
+              dialog.getName(),
+              sg.getSequencesAsArray(ap.av.hiddenRepSequences),
+              sg.getStartRes(), sg.getEndRes() + 1, ap.av.alignment
+              );
+
+          ap.alignFrame.addHistoryItem(editCommand);
+
+          ap.av.firePropertyChange("alignment", null,
+                                   ap.av.getAlignment().getSequences());
+        }
+      }
+  }
 }