X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=613976496d2b226f7e7ec42f32590838b2ff737f;hb=8f3cf5f09e970ac6e5d9032c03ec29f69fb4b356;hp=23a5008dfac6764de40e79eeeca2d16fd477a4ea;hpb=ca2d191924169cd2fa37a9eafcb7d4de41b28c53;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index 23a5008..6139764 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -277,7 +277,7 @@ public class PopupMenu extends JPopupMenu
             {
               public void actionPerformed(ActionEvent e)
               {
-                new AppVarna(seq.getSequenceAsString(), rnastruc, seq
+                new AppVarna(seq, seq.getSequenceAsString(), rnastruc, seq
                         .getName(), ap);
               }
             });
@@ -304,7 +304,7 @@ public class PopupMenu extends JPopupMenu
                 public void actionPerformed(ActionEvent e)
                 {
                   // TODO: VARNA does'nt print gaps in the sequence
-                  new AppVarna(seq.getSequenceAsString(), rnastruc, seq
+                  new AppVarna(seq,seq.getSequenceAsString(), rnastruc, seq
                           .getName(), ap);
                 }
               });