X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPopupMenu.java;h=7e8670424a16abe2989f1b1ec8b70644cd668c73;hb=8a2a0cda7067530f8481c2aec203e18d555f2dfd;hp=be9293f2b10d3833114abfddc99aee555ea8c3aa;hpb=dc78f37f49146f6339815e93598159d0c1ddc4c7;p=jalview.git

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index be9293f..7e86704 100644
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -1734,10 +1734,9 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
   protected void addReferenceAnnotations_actionPerformed(
           Map<SequenceI, List<AlignmentAnnotation>> candidates)
   {
-    final SequenceGroup selectionGroup = this.ap.av.getSelectionGroup();
     final AlignmentI alignment = this.ap.getAlignment();
     AlignmentUtils.addReferenceAnnotations(candidates, alignment,
-            selectionGroup);
+            null);
     refresh();
   }
 
@@ -2190,7 +2189,7 @@ public class PopupMenu extends JPopupMenu implements ColourChangeListener
 
     String[] omitHidden = null;
 
-    System.out.println("PROMPT USER HERE"); // TODO: decide if a prompt happens
+    jalview.bin.Console.outPrintln("PROMPT USER HERE"); // TODO: decide if a prompt happens
     // or we simply trust the user wants
     // wysiwig behaviour