X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPreferences.java;h=51138f299f62cfa25260418a29458d671c64d0d6;hb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;hp=bd4c90011ba27a6d18914e2657cc485c0bd1f9cd;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java index bd4c900..51138f2 100755 --- a/src/jalview/gui/Preferences.java +++ b/src/jalview/gui/Preferences.java @@ -1,20 +1,20 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1) + * Copyright (C) 2014 The Jalview Authors * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; @@ -22,12 +22,14 @@ import java.util.*; import java.awt.*; import java.awt.event.*; + import javax.swing.*; import jalview.bin.*; import jalview.io.*; import jalview.jbgui.*; import jalview.schemes.*; +import jalview.util.MessageManager; /** * DOCUMENT ME! @@ -37,17 +39,28 @@ import jalview.schemes.*; */ public class Preferences extends GPreferences { + /** * Holds name and link separated with | character. Sequence ID must be * $SEQUENCE_ID$ or $SEQUENCE_ID=/.possible | chars ./=$ */ public static Vector sequenceURLLinks; + + /** + * Holds name and link separated with | character. Sequence IDS and Sequences + * must be $SEQUENCEIDS$ or $SEQUENCEIDS=/.possible | chars ./=$ and + * $SEQUENCES$ or $SEQUENCES=/.possible | chars ./=$ and separation character + * for first and second token specified after a pipe character at end |,|. + * (TODO: proper escape for using | to separate ids or sequences + */ + + public static Vector groupURLLinks; static { String string = Cache .getDefault( "SEQUENCE_LINKS", - "SRS|http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:$SEQUENCE_ID$]))+-view+SwissEntry"); + "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"); sequenceURLLinks = new Vector(); try @@ -69,6 +82,24 @@ public class Preferences extends GPreferences { System.out.println(ex + "\nError parsing sequence links"); } + { + // upgrade old SRS link + int srsPos = sequenceURLLinks + .indexOf("SRS|http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:$SEQUENCE_ID$]))+-view+SwissEntry"); + if (srsPos > -1) + { + sequenceURLLinks.setElementAt( + "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$", + srsPos); + } + } + + /** + * TODO: reformulate groupURL encoding so two or more can be stored in the + * .properties file as '|' separated strings + */ + + groupURLLinks = new Vector(); } Vector nameLinks, urlLinks; @@ -77,6 +108,8 @@ public class Preferences extends GPreferences DasSourceBrowser dasSource; + private WsPreferences wsPrefs; + /** * Creates a new Preferences object. */ @@ -87,7 +120,8 @@ public class Preferences extends GPreferences frame.setContentPane(this); dasSource = new DasSourceBrowser(); dasPanel.add(dasSource, BorderLayout.CENTER); - + wsPrefs = new WsPreferences(); + wsPanel.add(wsPrefs, BorderLayout.CENTER); int width = 500, height = 420; if (new jalview.util.Platform().isAMac()) { @@ -95,7 +129,7 @@ public class Preferences extends GPreferences height = 460; } - Desktop.addInternalFrame(frame, "Preferences", width, height); + Desktop.addInternalFrame(frame, MessageManager.getString("label.preferences"), width, height); frame.setMinimumSize(new Dimension(width, height)); seqLimit.setSelected(Cache.getDefault("SHOW_JVSUFFIX", true)); @@ -103,16 +137,18 @@ public class Preferences extends GPreferences fullScreen.setSelected(Cache.getDefault("SHOW_FULLSCREEN", false)); annotations.setSelected(Cache.getDefault("SHOW_ANNOTATIONS", true)); - conservation.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true)); - quality.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true)); - identity.setEnabled(Cache.getDefault("SHOW_ANNOTATIONS", true)); - conservation.setSelected(Cache.getDefault("SHOW_CONSERVATION", true)); quality.setSelected(Cache.getDefault("SHOW_QUALITY", true)); identity.setSelected(Cache.getDefault("SHOW_IDENTITY", true)); openoverv.setSelected(Cache.getDefault("SHOW_OVERVIEW", false)); - - for (int i = 0; i < 13; i++) + showUnconserved + .setSelected(Cache.getDefault("SHOW_UNCONSERVED", false)); + showNpTooltip.setSelected(Cache + .getDefault("SHOW_NPFEATS_TOOLTIP", true)); + showDbRefTooltip.setSelected(Cache.getDefault("SHOW_DBREFS_TOOLTIP", + true)); + sortByTree.setSelected(Cache.getDefault("SORT_BY_TREE", false)); + for (int i = ColourSchemeProperty.FIRST_COLOUR; i <= ColourSchemeProperty.LAST_COLOUR; i++) { colour.addItem(ColourSchemeProperty.getColourName(i)); } @@ -121,6 +157,14 @@ public class Preferences extends GPreferences colour.setSelectedItem(string); + /** + * default min-max colours for annotation shading + */ + minColour.setBackground(Cache.getDefaultColour("ANNOTATIONCOLOUR_MIN", + Color.orange)); + maxColour.setBackground(Cache.getDefaultColour("ANNOTATIONCOLOUR_MAX", + Color.red)); + String[] fonts = java.awt.GraphicsEnvironment .getLocalGraphicsEnvironment().getAvailableFontFamilyNames(); @@ -157,7 +201,8 @@ public class Preferences extends GPreferences startupCheckbox .setSelected(Cache.getDefault("SHOW_STARTUP_FILE", true)); startupFileTextfield.setText(Cache.getDefault("STARTUP_FILE", - "http://www.jalview.org/examples/exampleFile_2_3.jar")); + Cache.getDefault("www.jalview.org", "http://www.jalview.org") + + "/examples/exampleFile_2_3.jar")); sortby.addItem("No sort"); sortby.addItem("Id"); @@ -169,7 +214,11 @@ public class Preferences extends GPreferences epsRendering.addItem("Text"); epsRendering.setSelectedItem(Cache.getDefault("EPS_RENDERING", "Prompt each time")); - + autoIdWidth.setSelected(Cache.getDefault("FIGURE_AUTOIDWIDTH", false)); + userIdWidth.setEnabled(autoIdWidth.isSelected()); + userIdWidthlabel.setEnabled(autoIdWidth.isSelected()); + Integer wi = Cache.getIntegerProperty("FIGURE_USERIDWIDTH"); + userIdWidth.setText(wi == null ? "" : wi.toString()); blcjv.setSelected(Cache.getDefault("BLC_JVSUFFIX", true)); clustaljv.setSelected(Cache.getDefault("CLUSTAL_JVSUFFIX", true)); fastajv.setSelected(Cache.getDefault("FASTA_JVSUFFIX", true)); @@ -182,6 +231,15 @@ public class Preferences extends GPreferences autoCalculateConsCheck.setSelected(Cache.getDefault( "AUTO_CALC_CONSENSUS", true)); + showGroupConsensus.setSelected(Cache.getDefault("SHOW_GROUP_CONSENSUS", + false)); + showGroupConservation.setSelected(Cache.getDefault( + "SHOW_GROUP_CONSERVATION", false)); + showConsensHistogram.setSelected(Cache.getDefault( + "SHOW_CONSENSUS_HISTOGRAM", true)); + showConsensLogo.setSelected(Cache.getDefault("SHOW_CONSENSUS_LOGO", + false)); + padGaps.setSelected(Cache.getDefault("PAD_GAPS", false)); /*************************************************************************** @@ -205,6 +263,17 @@ public class Preferences extends GPreferences proxyPortTB.setText(Cache.getDefault("PROXY_PORT", "")); defaultBrowser.setText(Cache.getDefault("DEFAULT_BROWSER", "")); + + usagestats.setSelected(Cache.getDefault("USAGESTATS", false)); + questionnaire + .setSelected(Cache.getProperty("NOQUESTIONNAIRES") == null); // note + // antisense + // here + versioncheck.setSelected(Cache.getDefault("VERSION_CHECK", true)); // default + // is + // true + annotations_actionPerformed(null); // update the display of the annotation + // settings try { jbInit(); @@ -219,27 +288,27 @@ public class Preferences extends GPreferences * DOCUMENT ME! * * @param e - * DOCUMENT ME! + * DOCUMENT ME! */ public void ok_actionPerformed(ActionEvent e) { - Cache.applicationProperties.setProperty("SHOW_JVSUFFIX", Boolean - .toString(seqLimit.isSelected())); - Cache.applicationProperties.setProperty("RIGHT_ALIGN_IDS", Boolean - .toString(rightAlign.isSelected())); - Cache.applicationProperties.setProperty("SHOW_FULLSCREEN", Boolean - .toString(fullScreen.isSelected())); - Cache.applicationProperties.setProperty("SHOW_OVERVIEW", Boolean - .toString(openoverv.isSelected())); - Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS", Boolean - .toString(annotations.isSelected())); - Cache.applicationProperties.setProperty("SHOW_CONSERVATION", Boolean - .toString(conservation.isSelected())); - Cache.applicationProperties.setProperty("SHOW_QUALITY", Boolean - .toString(quality.isSelected())); - Cache.applicationProperties.setProperty("SHOW_IDENTITY", Boolean - .toString(identity.isSelected())); + Cache.applicationProperties.setProperty("SHOW_JVSUFFIX", + Boolean.toString(seqLimit.isSelected())); + Cache.applicationProperties.setProperty("RIGHT_ALIGN_IDS", + Boolean.toString(rightAlign.isSelected())); + Cache.applicationProperties.setProperty("SHOW_FULLSCREEN", + Boolean.toString(fullScreen.isSelected())); + Cache.applicationProperties.setProperty("SHOW_OVERVIEW", + Boolean.toString(openoverv.isSelected())); + Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS", + Boolean.toString(annotations.isSelected())); + Cache.applicationProperties.setProperty("SHOW_CONSERVATION", + Boolean.toString(conservation.isSelected())); + Cache.applicationProperties.setProperty("SHOW_QUALITY", + Boolean.toString(quality.isSelected())); + Cache.applicationProperties.setProperty("SHOW_IDENTITY", + Boolean.toString(identity.isSelected())); Cache.applicationProperties.setProperty("DEFAULT_COLOUR", colour .getSelectedItem().toString()); @@ -253,23 +322,41 @@ public class Preferences extends GPreferences Cache.applicationProperties.setProperty("FONT_SIZE", fontSizeCB .getSelectedItem().toString()); - Cache.applicationProperties.setProperty("ID_ITALICS", Boolean - .toString(idItalics.isSelected())); - - Cache.applicationProperties.setProperty("ANTI_ALIAS", Boolean - .toString(smoothFont.isSelected())); - - Cache.applicationProperties.setProperty("WRAP_ALIGNMENT", Boolean - .toString(wrap.isSelected())); + Cache.applicationProperties.setProperty("ID_ITALICS", + Boolean.toString(idItalics.isSelected())); + Cache.applicationProperties.setProperty("SHOW_UNCONSERVED", + Boolean.toString(showUnconserved.isSelected())); + Cache.applicationProperties.setProperty("SHOW_GROUP_CONSENSUS", + Boolean.toString(showGroupConsensus.isSelected())); + Cache.applicationProperties.setProperty("SHOW_GROUP_CONSERVATION", + Boolean.toString(showGroupConservation.isSelected())); + Cache.applicationProperties.setProperty("SHOW_CONSENSUS_HISTOGRAM", + Boolean.toString(showConsensHistogram.isSelected())); + Cache.applicationProperties.setProperty("SHOW_CONSENSUS_LOGO", + Boolean.toString(showConsensLogo.isSelected())); + Cache.applicationProperties.setProperty("ANTI_ALIAS", + Boolean.toString(smoothFont.isSelected())); + Cache.applicationProperties.setProperty("SHOW_NPFEATS_TOOLTIP", + Boolean.toString(showNpTooltip.isSelected())); + Cache.applicationProperties.setProperty("SHOW_DBREFS_TOOLTIP", + Boolean.toString(showDbRefTooltip.isSelected())); + + Cache.applicationProperties.setProperty("WRAP_ALIGNMENT", + Boolean.toString(wrap.isSelected())); Cache.applicationProperties.setProperty("STARTUP_FILE", startupFileTextfield.getText()); - Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE", Boolean - .toString(startupCheckbox.isSelected())); + Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE", + Boolean.toString(startupCheckbox.isSelected())); Cache.applicationProperties.setProperty("SORT_ALIGNMENT", sortby .getSelectedItem().toString()); + Cache.setColourProperty("ANNOTATIONCOLOUR_MIN", + minColour.getBackground()); + Cache.setColourProperty("ANNOTATIONCOLOUR_MAX", + maxColour.getBackground()); + if (epsRendering.getSelectedItem().equals("Prompt each time")) { Cache.applicationProperties.remove("EPS_RENDERING"); @@ -305,16 +392,16 @@ public class Preferences extends GPreferences } // remove last "|" links.setLength(links.length() - 1); - Cache.applicationProperties.setProperty("SEQUENCE_LINKS", links - .toString()); + Cache.applicationProperties.setProperty("SEQUENCE_LINKS", + links.toString()); } else { Cache.applicationProperties.remove("SEQUENCE_LINKS"); } - Cache.applicationProperties.setProperty("USE_PROXY", Boolean - .toString(useProxy.isSelected())); + Cache.applicationProperties.setProperty("USE_PROXY", + Boolean.toString(useProxy.isSelected())); if (proxyServerTB.getText().trim().length() < 1) { @@ -322,8 +409,8 @@ public class Preferences extends GPreferences } else { - Cache.applicationProperties.setProperty("PROXY_SERVER", proxyServerTB - .getText()); + Cache.applicationProperties.setProperty("PROXY_SERVER", + proxyServerTB.getText()); } if (proxyPortTB.getText().trim().length() < 1) @@ -332,8 +419,8 @@ public class Preferences extends GPreferences } else { - Cache.applicationProperties.setProperty("PROXY_PORT", proxyPortTB - .getText()); + Cache.applicationProperties.setProperty("PROXY_PORT", + proxyPortTB.getText()); } if (useProxy.isSelected()) @@ -346,32 +433,57 @@ public class Preferences extends GPreferences System.setProperty("http.proxyHost", ""); System.setProperty("http.proxyPort", ""); } - - Cache.applicationProperties.setProperty("BLC_JVSUFFIX", Boolean - .toString(blcjv.isSelected())); - Cache.applicationProperties.setProperty("CLUSTAL_JVSUFFIX", Boolean - .toString(clustaljv.isSelected())); - Cache.applicationProperties.setProperty("FASTA_JVSUFFIX", Boolean - .toString(fastajv.isSelected())); - Cache.applicationProperties.setProperty("MSF_JVSUFFIX", Boolean - .toString(msfjv.isSelected())); - Cache.applicationProperties.setProperty("PFAM_JVSUFFIX", Boolean - .toString(pfamjv.isSelected())); - Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", Boolean - .toString(pileupjv.isSelected())); - Cache.applicationProperties.setProperty("PIR_JVSUFFIX", Boolean - .toString(pirjv.isSelected())); - Cache.applicationProperties.setProperty("PIR_MODELLER", Boolean - .toString(modellerOutput.isSelected())); + Cache.setProperty("VERSION_CHECK", + Boolean.toString(versioncheck.isSelected())); + if (Cache.getProperty("USAGESTATS") != null || usagestats.isSelected()) + { + // default is false - we only set this if the user has actively agreed + Cache.setProperty("USAGESTATS", + Boolean.toString(usagestats.isSelected())); + } + if (!questionnaire.isSelected()) + { + Cache.setProperty("NOQUESTIONNAIRES", "true"); + } + else + { + // special - made easy to edit a property file to disable questionnaires + // by just adding the given line + Cache.removeProperty("NOQUESTIONNAIRES"); + } + Cache.applicationProperties.setProperty("BLC_JVSUFFIX", + Boolean.toString(blcjv.isSelected())); + Cache.applicationProperties.setProperty("CLUSTAL_JVSUFFIX", + Boolean.toString(clustaljv.isSelected())); + Cache.applicationProperties.setProperty("FASTA_JVSUFFIX", + Boolean.toString(fastajv.isSelected())); + Cache.applicationProperties.setProperty("MSF_JVSUFFIX", + Boolean.toString(msfjv.isSelected())); + Cache.applicationProperties.setProperty("PFAM_JVSUFFIX", + Boolean.toString(pfamjv.isSelected())); + Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", + Boolean.toString(pileupjv.isSelected())); + Cache.applicationProperties.setProperty("PIR_JVSUFFIX", + Boolean.toString(pirjv.isSelected())); + Cache.applicationProperties.setProperty("PIR_MODELLER", + Boolean.toString(modellerOutput.isSelected())); jalview.io.PIRFile.useModellerOutput = modellerOutput.isSelected(); - Cache.applicationProperties.setProperty("AUTO_CALC_CONSENSUS", Boolean - .toString(autoCalculateConsCheck.isSelected())); - Cache.applicationProperties.setProperty("PAD_GAPS", Boolean - .toString(padGaps.isSelected())); + Cache.applicationProperties.setProperty("FIGURE_AUTOIDWIDTH", + Boolean.toString(autoIdWidth.isSelected())); + userIdWidth_actionPerformed(); + Cache.applicationProperties.setProperty("FIGURE_USERIDWIDTH", + userIdWidth.getText()); - dasSource.saveProperties(Cache.applicationProperties); + Cache.applicationProperties.setProperty("AUTO_CALC_CONSENSUS", + Boolean.toString(autoCalculateConsCheck.isSelected())); + Cache.applicationProperties.setProperty("SORT_BY_TREE", + Boolean.toString(sortByTree.isSelected())); + Cache.applicationProperties.setProperty("PAD_GAPS", + Boolean.toString(padGaps.isSelected())); + dasSource.saveProperties(Cache.applicationProperties); + wsPrefs.updateAndRefreshWsMenuConfig(false); Cache.saveProperties(); try { @@ -386,9 +498,10 @@ public class Preferences extends GPreferences */ public void startupFileTextfield_mouseClicked() { - JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache - .getProperty("LAST_DIRECTORY"), new String[] - { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "jar" }, + JalviewFileChooser chooser = new JalviewFileChooser( + jalview.bin.Cache.getProperty("LAST_DIRECTORY"), + new String[] + { "fa, fasta, fastq", "aln", "pfam", "msf", "pir", "blc", "jar" }, new String[] { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview" }, jalview.bin.Cache.getProperty("DEFAULT_FILE_FORMAT")); @@ -410,12 +523,14 @@ public class Preferences extends GPreferences * DOCUMENT ME! * * @param e - * DOCUMENT ME! + * DOCUMENT ME! */ public void cancel_actionPerformed(ActionEvent e) { try { + wsPrefs.updateWsMenuConfig(true); + wsPrefs.refreshWs_actionPerformed(e); frame.setClosed(true); } catch (Exception ex) { @@ -426,13 +541,19 @@ public class Preferences extends GPreferences * DOCUMENT ME! * * @param e - * DOCUMENT ME! + * DOCUMENT ME! */ public void annotations_actionPerformed(ActionEvent e) { conservation.setEnabled(annotations.isSelected()); quality.setEnabled(annotations.isSelected()); identity.setEnabled(annotations.isSelected()); + showGroupConsensus.setEnabled(annotations.isSelected()); + showGroupConservation.setEnabled(annotations.isSelected()); + showConsensHistogram.setEnabled(annotations.isSelected() + && (identity.isSelected() || showGroupConsensus.isSelected())); + showConsensLogo.setEnabled(annotations.isSelected() + && (identity.isSelected() || showGroupConsensus.isSelected())); } public void newLink_actionPerformed(ActionEvent e) @@ -443,7 +564,7 @@ public class Preferences extends GPreferences while (!valid) { if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link, - "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1, + MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION) { if (link.checkValid()) @@ -469,7 +590,7 @@ public class Preferences extends GPreferences if (index == -1) { JOptionPane.showInternalMessageDialog(Desktop.desktop, - "No link selected!", "No link selected", + MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"), JOptionPane.WARNING_MESSAGE); return; } @@ -482,7 +603,7 @@ public class Preferences extends GPreferences { if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link, - "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1, + MessageManager.getString("label.new_sequence_url_link"), JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION) { if (link.checkValid()) @@ -507,7 +628,7 @@ public class Preferences extends GPreferences if (index == -1) { JOptionPane.showInternalMessageDialog(Desktop.desktop, - "No link selected!", "No link selected", + MessageManager.getString("label.no_link_selected"), MessageManager.getString("label.no_link_selected"), JOptionPane.WARNING_MESSAGE); return; } @@ -536,7 +657,82 @@ public class Preferences extends GPreferences } + /* + * (non-Javadoc) + * + * @see + * jalview.jbgui.GPreferences#showunconserved_actionPerformed(java.awt.event + * .ActionEvent) + */ + protected void showunconserved_actionPerformed(ActionEvent e) + { + // TODO Auto-generated method stub + super.showunconserved_actionPerformed(e); + } + private void jbInit() throws Exception { } + + public static Collection getGroupURLLinks() + { + return groupURLLinks; + } + + public void minColour_actionPerformed() + { + Color col = JColorChooser.showDialog(this, + "Select Colour for Minimum Value", minColour.getBackground()); + if (col != null) + { + minColour.setBackground(col); + } + minColour.repaint(); + } + + public void maxColour_actionPerformed() + { + Color col = JColorChooser.showDialog(this, + "Select Colour for Maximum Value", maxColour.getBackground()); + if (col != null) + { + maxColour.setBackground(col); + } + maxColour.repaint(); + } + + @Override + protected void userIdWidth_actionPerformed() + { + try + { + String val = userIdWidth.getText().trim(); + if (val.length() > 0) + { + Integer iw = Integer.parseInt(val); + if (iw.intValue() < 12) + { + throw new NumberFormatException(); + } + userIdWidth.setText(iw.toString()); + } + } catch (NumberFormatException x) + { + JOptionPane + .showInternalMessageDialog( + Desktop.desktop, + "The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.", + "Invalid ID Column width", + JOptionPane.WARNING_MESSAGE); + userIdWidth.setText(""); + } + } + + @Override + protected void autoIdWidth_actionPerformed() + { + userIdWidth.setEnabled(!autoIdWidth.isSelected()); + userIdWidthlabel.setEnabled(!autoIdWidth.isSelected()); + } + }