X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPreferences.java;h=e44915da79b359601d869fa57686ee9d1176d7c1;hb=276594c533ac5346dab8b49d14efae9b49aac5c9;hp=21cfd86bfb7cf713034d954dff8b0bb8d5772e29;hpb=24fa71ff58eeef65619f56df7635a448e52a3ec8;p=jalview.git

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index 21cfd86..e44915d 100755
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.gui;
 
@@ -28,6 +31,7 @@ import jalview.bin.*;
 import jalview.io.*;
 import jalview.jbgui.*;
 import jalview.schemes.*;
+import jalview.util.MessageManager;
 
 /**
  * DOCUMENT ME!
@@ -80,15 +84,25 @@ public class Preferences extends GPreferences
     {
       System.out.println(ex + "\nError parsing sequence links");
     }
+    {
+      // upgrade old SRS link
+      int srsPos = sequenceURLLinks
+              .indexOf("SRS|http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:$SEQUENCE_ID$]))+-view+SwissEntry");
+      if (srsPos > -1)
+      {
+        sequenceURLLinks
+                .setElementAt(
+                        "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$",
+                        srsPos);
+      }
+    }
+
     /**
      * TODO: reformulate groupURL encoding so two or more can be stored in the
      * .properties file as '|' separated strings
      */
 
     groupURLLinks = new Vector();
-    // groupURLLinks.addElement("UNIPROT|EnVision2|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?tool=Jalview&workflow=Default&datasetName=JalviewIDs$DATASETID$&input=$SEQUENCEIDS$&inputType=0|,");
-    // groupURLLinks.addElement("Seqs|EnVision2|http://www.ebi.ac.uk/enfin-srv/envision2/pages/linkin.jsf?tool=Jalview&workflow=Default&datasetName=JalviewSeqs$DATASETID$&input=$SEQUENCES=/([A-Za-z]+)+/=$&inputType=1|,");
-
   }
 
   Vector nameLinks, urlLinks;
@@ -118,7 +132,8 @@ public class Preferences extends GPreferences
       height = 460;
     }
 
-    Desktop.addInternalFrame(frame, "Preferences", width, height);
+    Desktop.addInternalFrame(frame,
+            MessageManager.getString("label.preferences"), width, height);
     frame.setMinimumSize(new Dimension(width, height));
 
     seqLimit.setSelected(Cache.getDefault("SHOW_JVSUFFIX", true));
@@ -198,11 +213,10 @@ public class Preferences extends GPreferences
     sortby.addItem("Pairwise Identity");
     sortby.setSelectedItem(Cache.getDefault("SORT_ALIGNMENT", "No sort"));
 
-    epsRendering.addItem("Prompt each time");
-    epsRendering.addItem("Lineart");
-    epsRendering.addItem("Text");
-    epsRendering.setSelectedItem(Cache.getDefault("EPS_RENDERING",
-            "Prompt each time"));
+    epsRendering.addItem(MessageManager.getString("label.prompt_each_time"));
+    epsRendering.addItem(MessageManager.getString("label.lineart"));
+    epsRendering.addItem(MessageManager.getString("action.text"));
+    epsRendering.setSelectedIndex(0);
     autoIdWidth.setSelected(Cache.getDefault("FIGURE_AUTOIDWIDTH", false));
     userIdWidth.setEnabled(autoIdWidth.isSelected());
     userIdWidthlabel.setEnabled(autoIdWidth.isSelected());
@@ -495,7 +509,7 @@ public class Preferences extends GPreferences
             { "Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview" },
             jalview.bin.Cache.getProperty("DEFAULT_FILE_FORMAT"));
     chooser.setFileView(new JalviewFileView());
-    chooser.setDialogTitle("Select startup file");
+    chooser.setDialogTitle(MessageManager.getString("label.select_startup_file"));
 
     int value = chooser.showOpenDialog(this);
 
@@ -553,8 +567,8 @@ public class Preferences extends GPreferences
     while (!valid)
     {
       if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
-              "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1,
-              null) == JOptionPane.OK_OPTION)
+              MessageManager.getString("label.new_sequence_url_link"),
+              JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION)
       {
         if (link.checkValid())
         {
@@ -579,7 +593,8 @@ public class Preferences extends GPreferences
     if (index == -1)
     {
       JOptionPane.showInternalMessageDialog(Desktop.desktop,
-              "No link selected!", "No link selected",
+              MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
               JOptionPane.WARNING_MESSAGE);
       return;
     }
@@ -592,8 +607,8 @@ public class Preferences extends GPreferences
     {
 
       if (JOptionPane.showInternalConfirmDialog(Desktop.desktop, link,
-              "New sequence URL link", JOptionPane.OK_CANCEL_OPTION, -1,
-              null) == JOptionPane.OK_OPTION)
+              MessageManager.getString("label.new_sequence_url_link"),
+              JOptionPane.OK_CANCEL_OPTION, -1, null) == JOptionPane.OK_OPTION)
       {
         if (link.checkValid())
         {
@@ -617,7 +632,8 @@ public class Preferences extends GPreferences
     if (index == -1)
     {
       JOptionPane.showInternalMessageDialog(Desktop.desktop,
-              "No link selected!", "No link selected",
+              MessageManager.getString("label.no_link_selected"),
+              MessageManager.getString("label.no_link_selected"),
               JOptionPane.WARNING_MESSAGE);
       return;
     }
@@ -635,7 +651,7 @@ public class Preferences extends GPreferences
   public void defaultBrowser_mouseClicked(MouseEvent e)
   {
     JFileChooser chooser = new JFileChooser(".");
-    chooser.setDialogTitle("Select default web browser");
+    chooser.setDialogTitle(MessageManager.getString("label.select_default_browser"));
 
     int value = chooser.showOpenDialog(this);
 
@@ -671,7 +687,7 @@ public class Preferences extends GPreferences
   public void minColour_actionPerformed()
   {
     Color col = JColorChooser.showDialog(this,
-            "Select Colour for Minimum Value", minColour.getBackground());
+            MessageManager.getString("label.select_colour_minimum_value"), minColour.getBackground());
     if (col != null)
     {
       minColour.setBackground(col);
@@ -682,7 +698,7 @@ public class Preferences extends GPreferences
   public void maxColour_actionPerformed()
   {
     Color col = JColorChooser.showDialog(this,
-            "Select Colour for Maximum Value", maxColour.getBackground());
+            MessageManager.getString("label.select_colour_maximum_value"), maxColour.getBackground());
     if (col != null)
     {
       maxColour.setBackground(col);
@@ -710,8 +726,8 @@ public class Preferences extends GPreferences
       JOptionPane
               .showInternalMessageDialog(
                       Desktop.desktop,
-                      "The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.",
-                      "Invalid ID Column width",
+                      MessageManager.getString("warn.user_defined_width_requirements"),
+                      MessageManager.getString("label.invalid_id_column_width"),
                       JOptionPane.WARNING_MESSAGE);
       userIdWidth.setText("");
     }