X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPromptUserConfig.java;h=95b3fd4d587a6ca519461162623e5766f8075812;hb=0e2054d29bc49351f000d478659dc3c4371b251c;hp=ac15f2b0f248edebd970816b3bc0bf1cd59f6db0;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java
index ac15f2b..95b3fd4 100644
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -1,27 +1,26 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.gui;
 
 import jalview.bin.Cache;
 
 import java.awt.Component;
-import java.io.*;
-import java.net.*;
 
 import javax.swing.*;
 
@@ -200,12 +199,19 @@ public class PromptUserConfig implements Runnable
     }
     try
     {
-      int reply = JOptionPane.showInternalConfirmDialog(
+      int reply = JOptionPane.showConfirmDialog(
               Desktop.desktop, // component,
               dialogText, dialogTitle,
               (allowCancel) ? JOptionPane.YES_NO_CANCEL_OPTION
                       : JOptionPane.YES_NO_OPTION,
               JOptionPane.QUESTION_MESSAGE);
+      // now, ask the desktop to relayer any external windows that might have
+      // been obsured
+      if (Desktop.instance != null)
+      {
+        Desktop.instance.relayerWindows();
+      }
+      // and finish parsing the result
       jalview.bin.Cache.log.debug("Got response : " + reply);
       if (reply == JOptionPane.YES_OPTION)
       {