X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FPymolViewer.java;h=52c253d34a8117b1950fe4260c2e8dcfd170e8e4;hb=078d3939810e3be7d0ed9452df7db6b29e7b8e70;hp=9dc28c869f41e0006180418f0f677c8eecc926bb;hpb=d654b1f014790b7ae25e6eec631847170a930987;p=jalview.git

diff --git a/src/jalview/gui/PymolViewer.java b/src/jalview/gui/PymolViewer.java
index 9dc28c8..52c253d 100644
--- a/src/jalview/gui/PymolViewer.java
+++ b/src/jalview/gui/PymolViewer.java
@@ -270,9 +270,18 @@ public class PymolViewer extends StructureViewerBase
               stopProgressBar("", startTime);
             }
 
-            StructureFile pdb = binding.getSsm().setMapping(
-                    binding.getSequence()[pos], binding.getChains()[pos],
-                    pe.getFile(), protocol, getProgressIndicator());
+            StructureFile pdb = null;
+            if (pe.hasStructureFile())
+            {
+              pdb = pe.getStructureFile();
+              Console.debug("(Re)Using StructureFile " + pdb.getId());
+            }
+            else
+            {
+              pdb = binding.getSsm().setMapping(binding.getSequence()[pos],
+                      binding.getChains()[pos], pe.getFile(), protocol,
+                      getProgressIndicator());
+            }
             binding.stashFoundChains(pdb, pe.getFile());
           } catch (Exception ex)
           {