X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FRedundancyPanel.java;h=18a1edda4af9f22456e5c08b5dae7ad826407843;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=c8a0ec7752a954e2afaeeb67e653769502f33835;hpb=cca50cb3aee94f3ed1a5e504d45b8d8b665f8c5b;p=jalview.git

diff --git a/src/jalview/gui/RedundancyPanel.java b/src/jalview/gui/RedundancyPanel.java
index c8a0ec7..18a1edd 100755
--- a/src/jalview/gui/RedundancyPanel.java
+++ b/src/jalview/gui/RedundancyPanel.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -171,7 +171,8 @@ public class RedundancyPanel extends GSliderPanel implements Runnable
     progress.setVisible(false);
     progress = null;
 
-    label.setText(MessageManager.getString("label.enter_redundancy_thereshold"));
+    label.setText(MessageManager
+            .getString("label.enter_redundancy_thereshold"));
     slider.setVisible(true);
     applyButton.setEnabled(true);
     valueField.setVisible(true);
@@ -240,7 +241,8 @@ public class RedundancyPanel extends GSliderPanel implements Runnable
         }
       }
 
-      EditCommand cut = new EditCommand(MessageManager.getString("action.remove_redundancy"),
+      EditCommand cut = new EditCommand(
+              MessageManager.getString("action.remove_redundancy"),
               Action.CUT, deleted, 0, width, ap.av.getAlignment());
 
       for (int i = 0; i < del.size(); i++)
@@ -257,7 +259,8 @@ public class RedundancyPanel extends GSliderPanel implements Runnable
       ap.alignFrame.addHistoryItem(cut);
 
       PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
-       ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
+      ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
+              .getSequences());
     }
 
   }
@@ -270,17 +273,19 @@ public class RedundancyPanel extends GSliderPanel implements Runnable
    */
   public void undoButton_actionPerformed(ActionEvent e)
   {
-    if(historyList == null || historyList.isEmpty()){
-        undoButton.setEnabled(false);
-    	return;
+    if (historyList == null || historyList.isEmpty())
+    {
+      undoButton.setEnabled(false);
+      return;
     }
-    
+
     CommandI command = historyList.pop();
-    if (ap.av.historyList.contains(command))
+    if (ap.av.getHistoryList().contains(command))
     {
       command.undoCommand(af.getViewAlignments());
-      ap.av.historyList.remove(command);
-      ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
+      ap.av.getHistoryList().remove(command);
+      ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
+              .getSequences());
       af.updateEditMenuBar();
     }