X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FRotatableCanvas.java;h=4ef18d49014a8ea40f5c54a6468a19d824cc8365;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=a9e2ebf7b8628ac30561c3377024477ab6c547fb;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git diff --git a/src/jalview/gui/RotatableCanvas.java b/src/jalview/gui/RotatableCanvas.java index a9e2ebf..4ef18d4 100755 --- a/src/jalview/gui/RotatableCanvas.java +++ b/src/jalview/gui/RotatableCanvas.java @@ -1,31 +1,52 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1) - * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.gui; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; -import javax.swing.*; - -import jalview.datamodel.*; -import jalview.math.*; +import jalview.api.RotatableCanvasI; +import jalview.datamodel.SequenceGroup; +import jalview.datamodel.SequenceI; +import jalview.datamodel.SequencePoint; +import jalview.math.RotatableMatrix; +import jalview.util.MessageManager; +import jalview.viewmodel.AlignmentViewport; + +import java.awt.Color; +import java.awt.Dimension; +import java.awt.Font; +import java.awt.Graphics; +import java.awt.Graphics2D; +import java.awt.Image; +import java.awt.RenderingHints; +import java.awt.event.InputEvent; +import java.awt.event.KeyEvent; +import java.awt.event.KeyListener; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.awt.event.MouseMotionListener; +import java.awt.event.MouseWheelEvent; +import java.awt.event.MouseWheelListener; +import java.util.Vector; + +import javax.swing.JPanel; +import javax.swing.ToolTipManager; /** * DOCUMENT ME! @@ -34,7 +55,7 @@ import jalview.math.*; * @version $Revision$ */ public class RotatableCanvas extends JPanel implements MouseListener, - MouseMotionListener, KeyListener + MouseMotionListener, KeyListener, RotatableCanvasI { RotatableMatrix idmat = new RotatableMatrix(3, 3); @@ -97,7 +118,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, float scalefactor = 1; - AlignViewport av; + AlignmentViewport av; AlignmentPanel ap; @@ -139,14 +160,18 @@ public class RotatableCanvas extends JPanel implements MouseListener, repaint(); } + boolean first = true; + public void setPoints(Vector points, int npoint) { this.points = points; this.npoint = npoint; - ToolTipManager.sharedInstance().registerComponent(this); - ToolTipManager.sharedInstance().setInitialDelay(0); - ToolTipManager.sharedInstance().setDismissDelay(10000); - + if (first) + { + ToolTipManager.sharedInstance().registerComponent(this); + ToolTipManager.sharedInstance().setInitialDelay(0); + ToolTipManager.sharedInstance().setDismissDelay(10000); + } prefsize = getPreferredSize(); orig = new float[npoint][3]; @@ -187,11 +212,14 @@ public class RotatableCanvas extends JPanel implements MouseListener, findWidth(); scale = findScale(); + if (first) + { - addMouseListener(this); - - addMouseMotionListener(this); + addMouseListener(this); + addMouseMotionListener(this); + } + first = false; } public void initAxes() @@ -350,7 +378,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param g - * DOCUMENT ME! + * DOCUMENT ME! */ public void paintComponent(Graphics g1) { @@ -362,7 +390,9 @@ public class RotatableCanvas extends JPanel implements MouseListener, if (points == null) { g.setFont(new Font("Verdana", Font.PLAIN, 18)); - g.drawString("Calculating PCA....", 20, getHeight() / 2); + g.drawString( + MessageManager.getString("label.calculating_pca") + "....", + 20, getHeight() / 2); } else { @@ -396,7 +426,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param g - * DOCUMENT ME! + * DOCUMENT ME! */ public void drawAxes(Graphics g) { @@ -405,9 +435,9 @@ public class RotatableCanvas extends JPanel implements MouseListener, for (int i = 0; i < 3; i++) { - g.drawLine(getWidth() / 2, getHeight() / 2, (int) ((axes[i][0] - * scale * max[0]) + (getWidth() / 2)), (int) ((axes[i][1] - * scale * max[1]) + (getHeight() / 2))); + g.drawLine(getWidth() / 2, getHeight() / 2, + (int) ((axes[i][0] * scale * max[0]) + (getWidth() / 2)), + (int) ((axes[i][1] * scale * max[1]) + (getHeight() / 2))); } } @@ -415,9 +445,9 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param g - * DOCUMENT ME! + * DOCUMENT ME! * @param col - * DOCUMENT ME! + * DOCUMENT ME! */ public void drawBackground(Graphics g, Color col) { @@ -429,7 +459,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param g - * DOCUMENT ME! + * DOCUMENT ME! */ public void drawScene(Graphics g1) { @@ -461,8 +491,8 @@ public class RotatableCanvas extends JPanel implements MouseListener, if (av.getSelectionGroup() != null) { - if (av.getSelectionGroup().getSequences(null).contains( - ((SequencePoint) points.elementAt(i)).sequence)) + if (av.getSelectionGroup().getSequences(null) + .contains(((SequencePoint) points.elementAt(i)).sequence)) { g.setColor(Color.gray); } @@ -477,8 +507,9 @@ public class RotatableCanvas extends JPanel implements MouseListener, if (showLabels) { g.setColor(Color.red); - g.drawString(((SequencePoint) points.elementAt(i)).sequence - .getName(), x - 3, y - 4); + g.drawString( + ((SequencePoint) points.elementAt(i)).sequence.getName(), + x - 3, y - 4); } } @@ -514,7 +545,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void keyTyped(KeyEvent evt) { @@ -524,7 +555,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void keyReleased(KeyEvent evt) { @@ -534,7 +565,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void keyPressed(KeyEvent evt) { @@ -565,7 +596,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mouseClicked(MouseEvent evt) { @@ -575,7 +606,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mouseEntered(MouseEvent evt) { @@ -585,7 +616,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mouseExited(MouseEvent evt) { @@ -595,7 +626,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mouseReleased(MouseEvent evt) { @@ -605,7 +636,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mousePressed(MouseEvent evt) { @@ -643,8 +674,8 @@ public class RotatableCanvas extends JPanel implements MouseListener, { aps[a].av.setSelectionGroup(new SequenceGroup()); aps[a].av.getSelectionGroup().addOrRemove(found, true); - aps[a].av.getSelectionGroup().setEndRes( - aps[a].av.alignment.getWidth() - 1); + aps[a].av.getSelectionGroup() + .setEndRes(aps[a].av.getAlignment().getWidth() - 1); } } PaintRefresher.Refresh(this, av.getSequenceSetId()); @@ -677,7 +708,7 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param evt - * DOCUMENT ME! + * DOCUMENT ME! */ public void mouseDragged(MouseEvent evt) { @@ -729,28 +760,30 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param x1 - * DOCUMENT ME! + * DOCUMENT ME! * @param y1 - * DOCUMENT ME! + * DOCUMENT ME! * @param x2 - * DOCUMENT ME! + * DOCUMENT ME! * @param y2 - * DOCUMENT ME! + * DOCUMENT ME! */ public void rectSelect(int x1, int y1, int x2, int y2) { for (int i = 0; i < npoint; i++) { SequencePoint sp = (SequencePoint) points.elementAt(i); - int tmp1 = (int) (((sp.coord[0] - centre[0]) * scale) + ((float) getWidth() / 2.0)); - int tmp2 = (int) (((sp.coord[1] - centre[1]) * scale) + ((float) getHeight() / 2.0)); + int tmp1 = (int) (((sp.coord[0] - centre[0]) * scale) + + ((float) getWidth() / 2.0)); + int tmp2 = (int) (((sp.coord[1] - centre[1]) * scale) + + ((float) getHeight() / 2.0)); if ((tmp1 > x1) && (tmp1 < x2) && (tmp2 > y1) && (tmp2 < y2)) { if (av != null) { - if (!av.getSelectionGroup().getSequences(null).contains( - sp.sequence)) + if (!av.getSelectionGroup().getSequences(null) + .contains(sp.sequence)) { av.getSelectionGroup().addSequence(sp.sequence, true); } @@ -767,9 +800,9 @@ public class RotatableCanvas extends JPanel implements MouseListener, * DOCUMENT ME! * * @param x - * DOCUMENT ME! + * DOCUMENT ME! * @param y - * DOCUMENT ME! + * DOCUMENT ME! * * @return DOCUMENT ME! */ @@ -812,8 +845,23 @@ public class RotatableCanvas extends JPanel implements MouseListener, } else { - return new AlignmentPanel[] - { ap }; + return new AlignmentPanel[] { ap }; } } + + /** + * + * @return x,y,z positions of point s (index into points) under current + * transform. + */ + public double[] getPointPosition(int s) + { + double pts[] = new double[3]; + float[] p = ((SequencePoint) points.elementAt(s)).coord; + pts[0] = p[0]; + pts[1] = p[1]; + pts[2] = p[2]; + return pts; + } + }