X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FScalePanel.java;fp=src%2Fjalview%2Fgui%2FScalePanel.java;h=90f7cd2fd98f92f788a2a0ec88645104ac175334;hb=14985603cea28569e295ddabb219da8034f1c7b2;hp=bc59f912bbde73d3eb4fcf860e2f28fa8551e60e;hpb=536a4a9c407a4c07b71e86e75135eaa2ba5e8850;p=jalview.git

diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java
index bc59f91..90f7cd2 100755
--- a/src/jalview/gui/ScalePanel.java
+++ b/src/jalview/gui/ScalePanel.java
@@ -399,10 +399,10 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
 
     res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res);
 
-    if (av.getAlignment().getHiddenColumns().getListOfCols() != null)
+    if (av.getAlignment().getHiddenColumns().getHiddenRegions() != null)
     {
       for (int[] region : av.getAlignment().getHiddenColumns()
-              .getListOfCols())
+              .getHiddenRegions())
       {
         if (res + 1 == region[0] || res - 1 == region[1])
         {
@@ -495,9 +495,9 @@ public class ScalePanel extends JPanel implements MouseMotionListener,
       gg.setColor(Color.blue);
       int res;
 
-      if (av.getShowHiddenMarkers() && hidden.getListOfCols() != null)
+      if (av.getShowHiddenMarkers() && hidden.getHiddenRegions() != null)
       {
-        for (int i = 0; i < hidden.getListOfCols()
+        for (int i = 0; i < hidden.getHiddenRegions()
                 .size(); i++)
         {
           res = hidden.findHiddenRegionPosition(i)