X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FScalePanel.java;h=486b87a578c7b880c94369461b9ee0f0ad4c65c7;hb=0039639a8b6fa7a9bfc131c83a493b5a696f0104;hp=de0a7b1c70d837318717a0aeb3dd5c20c1148610;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java index de0a7b1..486b87a 100755 --- a/src/jalview/gui/ScalePanel.java +++ b/src/jalview/gui/ScalePanel.java @@ -1,191 +1,281 @@ /* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ - + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ package jalview.gui; import jalview.datamodel.*; + import java.awt.*; import java.awt.event.*; + import javax.swing.*; + +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ public class ScalePanel extends JPanel { - - protected int offy = 4; - public int width; - - protected AlignViewport av; - AlignmentPanel ap; - - boolean stretchingGroup = false; - - public ScalePanel(AlignViewport av, AlignmentPanel ap) - { - this.av = av; - this.ap = ap; - - addMouseListener(new MouseAdapter() + protected int offy = 4; + + /** DOCUMENT ME!! */ + public int width; + protected AlignViewport av; + AlignmentPanel ap; + boolean stretchingGroup = false; + int min; //used by mouseDragged to see if user + int max; //used by mouseDragged to see if user + + // wants to delete columns + public ScalePanel(AlignViewport av, AlignmentPanel ap) { - public void mousePressed(MouseEvent evt) - { - doMousePressed(evt); - } - public void mouseReleased(MouseEvent evt) - { - doMouseReleased(evt); - } - - }); - addMouseMotionListener(new MouseMotionAdapter() - { - public void mouseDragged(MouseEvent evt) - { - doMouseDragged(evt); - } - }); - - } - - - public void doMousePressed(MouseEvent evt) { - int x = evt.getX(); - int res = x/av.getCharWidth() + av.getStartRes(); - SequenceGroup sg = null; + this.av = av; + this.ap = ap; + + addMouseListener(new MouseAdapter() + { + public void mousePressed(MouseEvent evt) + { + doMousePressed(evt); + } + + public void mouseReleased(MouseEvent evt) + { + doMouseReleased(evt); + } + }); + addMouseMotionListener(new MouseMotionAdapter() + { + public void mouseDragged(MouseEvent evt) + { + doMouseDragged(evt); + } + }); + } - if (av.getColumnSelection().contains(res)) - av.getColumnSelection().removeElement(res); - else + /** + * DOCUMENT ME! + * + * @param evt DOCUMENT ME! + */ + public void doMousePressed(MouseEvent evt) { - av.getColumnSelection().addElement(res); - - sg = new SequenceGroup(); - for (int i = 0; i < av.alignment.getSequences().size(); i++) - sg.addSequence(av.alignment.getSequenceAt(i)); - - sg.setStartRes(res); - sg.setEndRes(res); - - ap.annotationPanel.addEditableColumn(res); + int x = evt.getX(); + int res = (x / av.getCharWidth()) + av.getStartRes(); + SequenceGroup sg = null; + + min = res; + max = res; + + if (av.getColumnSelection().contains(res)) + { + av.getColumnSelection().removeElement(res); + ap.annotationPanel.removeEditableColumn(res); + } + else + { + av.getColumnSelection().addElement(res); + sg = new SequenceGroup(); + + for (int i = 0; i < av.alignment.getSequences().size(); i++) + { + sg.addSequence(av.alignment.getSequenceAt(i), false); + } + + sg.setStartRes(res); + sg.setEndRes(res); + } + + av.setSelectionGroup(sg); + ap.repaint(); } - av.setSelectionGroup(sg); - ap.repaint(); - } - public void doMouseReleased(MouseEvent evt) - { - if(!stretchingGroup) - return; - - int x = evt.getX(); - int res = x/av.getCharWidth() + av.getStartRes(); - - if (! av.getColumnSelection().contains(res)) - av.getColumnSelection().addElement(res); - - SequenceGroup sg = av.getSelectionGroup(); - - if(res>sg.getStartRes()) - sg.setEndRes(res); - else if(res sg.getStartRes()) - sg.setEndRes(res); - else if (res < sg.getStartRes()) - sg.setStartRes(res); - - ap.annotationPanel.addEditableColumn(res); - ap.repaint(); + int x = evt.getX(); + int res = (x / av.getCharWidth()) + av.getStartRes(); + + if (av.getColumnSelection() != null) + { + for (int i = 0; i < av.getColumnSelection().size(); i++) + { + ap.annotationPanel.addEditableColumn(av.getColumnSelection() + .columnAt(i)); + } + } + + if (!stretchingGroup) + { + ap.repaint(); + + return; + } + + SequenceGroup sg = av.getSelectionGroup(); + + if (res > sg.getStartRes()) + { + sg.setEndRes(res); + } + else if (res < sg.getStartRes()) + { + sg.setStartRes(res); + } + + stretchingGroup = false; + ap.repaint(); } - } - - public void paintComponent(Graphics g) - { - drawScale(g, av.getStartRes(), av.getEndRes(), getWidth(), getHeight()); - } - -// scalewidth will normally be screenwidth, - public void drawScale(Graphics g, int startx, int endx, int width, int height) - { - Graphics2D gg = (Graphics2D)g; - gg.setFont(av.getFont()); - gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,RenderingHints.VALUE_ANTIALIAS_ON); - - //Fill in the background - gg.setColor(Color.white); - gg.fillRect(0,0,width, height); - gg.setColor(Color.black); - - - //Fill the selected columns - ColumnSelection cs = av.getColumnSelection(); - gg.setColor(new Color(220,0,0)); - for (int i=0; i= startx && sel <= endx) - gg.fillRect((sel-startx)*av.charWidth,0,av.charWidth,getHeight()); + int x = evt.getX(); + int res = (x / av.getCharWidth()) + av.getStartRes(); + + if (res < min) + { + min = res; + } + + if (res > max) + { + max = res; + } + + SequenceGroup sg = av.getSelectionGroup(); + + if (sg != null) + { + stretchingGroup = true; + + if (!av.getColumnSelection().contains(res)) + { + av.getColumnSelection().addElement(res); + } + + if (res > sg.getStartRes()) + { + sg.setEndRes(res); + } + else if (res < sg.getStartRes()) + { + sg.setStartRes(res); + } + + for (int i = min; i <= max; i++) + { + if ((i < sg.getStartRes()) || (i > sg.getEndRes())) + { + av.getColumnSelection().removeElement(i); + ap.annotationPanel.removeEditableColumn(res); + } + else + { + av.getColumnSelection().addElement(i); + } + } + + ap.repaint(); + } } - - // Draw the scale numbers - gg.setColor(Color.black); - int scalestartx = (startx/10) * 10; - - FontMetrics fm = gg.getFontMetrics(av.getFont()); - int y = av.charHeight -fm.getDescent(); - - if(scalestartx%10==0) - scalestartx+=5; - - for (int i=scalestartx;i < endx; i+= 5) + /** + * DOCUMENT ME! + * + * @param g DOCUMENT ME! + */ + public void paintComponent(Graphics g) { - if(i%10==0) - { - gg.drawString(String.valueOf(i), (i - startx - 1) * av.charWidth, y); - gg.drawLine( (int) ( (i - startx - 1) * av.charWidth + av.charWidth / 2), - y+2, - (int) ( (i - startx - 1) * av.charWidth + av.charWidth / 2), - y+fm.getDescent()*2); - } - else - gg.drawLine( (int) ( (i - startx - 1) * av.charWidth + av.charWidth / 2), - y+fm.getDescent(), - (int) ( (i - startx - 1) * av.charWidth + av.charWidth / 2), - y+fm.getDescent()*2); - - + drawScale(g, av.getStartRes(), av.getEndRes(), getWidth(), getHeight()); } - } - + // scalewidth will normally be screenwidth, + public void drawScale(Graphics g, int startx, int endx, int width, + int height) + { + Graphics2D gg = (Graphics2D) g; + gg.setFont(av.getFont()); + gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING, + RenderingHints.VALUE_ANTIALIAS_ON); + + //Fill in the background + gg.setColor(Color.white); + gg.fillRect(0, 0, width, height); + gg.setColor(Color.black); + + //Fill the selected columns + ColumnSelection cs = av.getColumnSelection(); + gg.setColor(new Color(220, 0, 0)); + + for (int i = 0; i < cs.size(); i++) + { + int sel = cs.columnAt(i); + + if ((sel >= startx) && (sel <= endx)) + { + gg.fillRect((sel - startx) * av.charWidth, 0, av.charWidth, + getHeight()); + } + } + + // Draw the scale numbers + gg.setColor(Color.black); + + int scalestartx = (startx / 10) * 10; + + FontMetrics fm = gg.getFontMetrics(av.getFont()); + int y = av.charHeight - fm.getDescent(); + + if ((scalestartx % 10) == 0) + { + scalestartx += 5; + } + + for (int i = scalestartx; i < endx; i += 5) + { + if ((i % 10) == 0) + { + gg.drawString(String.valueOf(i), + (i - startx - 1) * av.charWidth, y); + gg.drawLine((int) (((i - startx - 1) * av.charWidth) + + (av.charWidth / 2)), y + 2, + (int) (((i - startx - 1) * av.charWidth) + + (av.charWidth / 2)), y + (fm.getDescent() * 2)); + } + else + { + gg.drawLine((int) (((i - startx - 1) * av.charWidth) + + (av.charWidth / 2)), y + fm.getDescent(), + (int) (((i - startx - 1) * av.charWidth) + + (av.charWidth / 2)), y + (fm.getDescent() * 2)); + } + } + } }