X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FScalePanel.java;h=b95c5692451ab71254087bc681f5c2e8ada11ced;hb=49a555c3890bc93583a5e0d8f0f237db21f5e3d3;hp=23108663b4b6c50f4e386811a0226a05d0dd762e;hpb=d5702bf3268c2688e90d645ec635ad5bb5d3a76e;p=jalview.git diff --git a/src/jalview/gui/ScalePanel.java b/src/jalview/gui/ScalePanel.java index 2310866..b95c569 100755 --- a/src/jalview/gui/ScalePanel.java +++ b/src/jalview/gui/ScalePanel.java @@ -23,7 +23,6 @@ package jalview.gui; import jalview.datamodel.ColumnSelection; import jalview.datamodel.HiddenColumns; import jalview.datamodel.SequenceGroup; -import jalview.datamodel.SequenceI; import jalview.renderer.ScaleRenderer; import jalview.renderer.ScaleRenderer.ScaleMark; import jalview.util.MessageManager; @@ -35,6 +34,7 @@ import java.awt.Color; import java.awt.FontMetrics; import java.awt.Graphics; import java.awt.Graphics2D; +import java.awt.Point; import java.awt.RenderingHints; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; @@ -113,7 +113,7 @@ public class ScalePanel extends JPanel if (av.hasHiddenColumns()) { - x = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(x); + x = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(x); } if (x >= av.getAlignment().getWidth()) @@ -158,7 +158,12 @@ public class ScalePanel extends JPanel protected void rightMouseButtonPressed(MouseEvent evt, final int res) { JPopupMenu pop = new JPopupMenu(); - if (reveal != null) + + /* + * grab the hidden range in case mouseMoved nulls it + */ + final int[] hiddenRange = reveal; + if (hiddenRange != null) { JMenuItem item = new JMenuItem( MessageManager.getString("label.reveal")); @@ -167,15 +172,16 @@ public class ScalePanel extends JPanel @Override public void actionPerformed(ActionEvent e) { - av.showColumn(reveal[0]); + av.showColumn(hiddenRange[0]); reveal = null; + ap.updateLayout(); ap.paintAlignment(true, true); av.sendSelection(); } }); pop.add(item); - if (av.getAlignment().getHiddenColumns().hasManyHiddenColumns()) + if (av.getAlignment().getHiddenColumns().hasMultiHiddenColumnRegions()) { item = new JMenuItem(MessageManager.getString("action.reveal_all")); item.addActionListener(new ActionListener() @@ -185,6 +191,7 @@ public class ScalePanel extends JPanel { av.showAllHiddenColumns(); reveal = null; + ap.updateLayout(); ap.paintAlignment(true, true); av.sendSelection(); } @@ -209,6 +216,7 @@ public class ScalePanel extends JPanel av.setSelectionGroup(null); } + ap.updateLayout(); ap.paintAlignment(true, true); av.sendSelection(); } @@ -237,15 +245,7 @@ public class ScalePanel extends JPanel } av.getColumnSelection().addElement(res); - SequenceGroup sg = new SequenceGroup(); - // try to be as quick as possible - SequenceI[] iVec = av.getAlignment().getSequencesArray(); - for (int i = 0; i < iVec.length; i++) - { - sg.addSequence(iVec[i], false); - iVec[i] = null; - } - iVec = null; + SequenceGroup sg = new SequenceGroup(av.getAlignment().getSequences()); sg.setStartRes(res); sg.setEndRes(res); @@ -266,29 +266,28 @@ public class ScalePanel extends JPanel } /** - * DOCUMENT ME! + * Action on mouseUp is to set the limit of the current selection group (if + * there is one) and broadcast the selection * * @param evt - * DOCUMENT ME! */ @Override public void mouseReleased(MouseEvent evt) { + boolean wasDragging = mouseDragging; mouseDragging = false; + ap.getSeqPanel().stopScrolling(); - int res = (evt.getX() / av.getCharWidth()) + int xCords = Math.max(0, evt.getX()); // prevent negative X coordinates + int res = (xCords / av.getCharWidth()) + av.getRanges().getStartRes(); - if (av.hasHiddenColumns()) { res = av.getAlignment().getHiddenColumns() - .adjustForHiddenColumns(res); - } - - if (res >= av.getAlignment().getWidth()) - { - res = av.getAlignment().getWidth() - 1; + .visibleToAbsoluteColumn(res); } + res = Math.min(res, av.getRanges().getEndRes()); + res = Math.max(0, res); if (!stretchingGroup) { @@ -315,15 +314,26 @@ public class ScalePanel extends JPanel { sg.setStartRes(res); } + if (wasDragging) + { + min = Math.min(res, min); + max = Math.max(res, max); + av.getColumnSelection().stretchGroup(res, sg, min, max); + } } stretchingGroup = false; ap.paintAlignment(false, false); + av.isSelectionGroupChanged(true); + av.isColSelChanged(true); av.sendSelection(); } /** * Action on dragging the mouse in the scale panel is to expand or shrink the - * selection group range (including any hidden columns that it spans) + * selection group range (including any hidden columns that it spans). Note + * that the selection is only broadcast at the start of the drag (on + * mousePressed) and at the end (on mouseReleased), to avoid overload + * redrawing of other views. * * @param evt */ @@ -337,7 +347,7 @@ public class ScalePanel extends JPanel int res = (evt.getX() / av.getCharWidth()) + av.getRanges().getStartRes(); res = Math.max(0, res); - res = hidden.adjustForHiddenColumns(res); + res = hidden.visibleToAbsoluteColumn(res); res = Math.min(res, av.getAlignment().getWidth() - 1); min = Math.min(res, min); max = Math.max(res, max); @@ -356,16 +366,22 @@ public class ScalePanel extends JPanel { if (mouseDragging) { - ap.getSeqPanel().scrollCanvas(null); + ap.getSeqPanel().stopScrolling(); } } + /** + * Action on leaving the panel bounds with mouse drag in progress is to start + * scrolling the alignment in the direction of the mouse. To restrict + * scrolling to left-right (not up-down), the y-value of the mouse position is + * replaced with zero. + */ @Override public void mouseExited(MouseEvent evt) { if (mouseDragging) { - ap.getSeqPanel().scrollCanvas(evt); + ap.getSeqPanel().startScrolling(new Point(evt.getX(), 0)); } } @@ -393,7 +409,7 @@ public class ScalePanel extends JPanel reveal = av.getAlignment().getHiddenColumns() .getRegionWithEdgeAtRes(res); - res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res); + res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res); ToolTipManager.sharedInstance().registerComponent(this); this.setToolTipText( @@ -410,6 +426,8 @@ public class ScalePanel extends JPanel @Override public void paintComponent(Graphics g) { + super.paintComponent(g); + /* * shouldn't get called in wrapped mode as the scale above is * drawn instead by SeqCanvas.drawNorthScale @@ -458,7 +476,7 @@ public class ScalePanel extends JPanel { if (hidden.isVisible(sel)) { - sel = hidden.findColumnPosition(sel); + sel = hidden.absoluteToVisibleColumn(sel); } else { @@ -488,7 +506,7 @@ public class ScalePanel extends JPanel if (av.getShowHiddenMarkers()) { - Iterator it = hidden.getBoundedStartIterator(startx, + Iterator it = hidden.getStartRegionIterator(startx, startx + widthx + 1); while (it.hasNext()) { @@ -550,7 +568,11 @@ public class ScalePanel extends JPanel || evt.getPropertyName().equals(ViewportRanges.MOVE_VIEWPORT)) { // scroll event, repaint panel - repaint(); + + // Call repaint on alignment panel so that repaints from other alignment + // panel components can be aggregated. Otherwise performance of the overview + // window and others may be adversely affected. + av.getAlignPanel().repaint(); } }