X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqCanvas.java;h=27a8a9ccae9fdb52e32414a8ca3d3b8e4116ae2a;hb=21e2a80f7db56c011481d65d5bcb458654226e20;hp=663977421e2242eb9a04b3140bf61b9eb23fb8f2;hpb=c6e2247dff4ec4158d0d234a22390fae4baff178;p=jalview.git

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 6639774..27a8a9c 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -209,6 +209,7 @@ public class SeqCanvas extends JPanel
 
     SequenceI nextSeq;
     SequenceGroup group=null;
+    SequenceGroup [] groups=null;
     boolean inGroup=false; // are we in a defined group?
     boolean inRB=false; //Are we in a rubberband group?
     int sx=-1, sy=-1, ex=-1, ey=-1;
@@ -219,8 +220,9 @@ public class SeqCanvas extends JPanel
      nextSeq = av.getAlignment().getSequenceAt(i);
 
      group = av.alignment.findGroup( nextSeq );
+     groups = av.alignment.findAllGroups( nextSeq );
 
-     sr.drawSequence(g, nextSeq, group,x1,x2,
+     sr.drawSequence(g, nextSeq, groups,x1,x2,
                  (x1 - startx) * charWidth,
                  offset + AlignmentUtil.getPixelHeight(starty, i, av.getCharHeight()),
                  charWidth,charHeight,null, i);
@@ -308,7 +310,7 @@ public class SeqCanvas extends JPanel
         int searchStart = searchResults[r+1];
         int searchEnd = searchResults[r+2];
 
-        if (searchSeq >= y1 && searchSeq <= y2)
+        if (searchSeq >= y1 && searchSeq < y2)
         {
           SequenceRenderer ssr = (SequenceRenderer) sr;
           ssr.drawHighlightedText(av.getAlignment().getSequenceAt(searchSeq),