X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqCanvas.java;h=8623872ff550697490b6fcfc3e791e57ce448e5f;hb=f5f5806de6923a8a62906c5a62c6276ba56ae0da;hp=c4de7cda92564873ff47b3e4206d39d36599d9cf;hpb=df9b85c1cf39894039018499fe802406cc37f209;p=jalview.git

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index c4de7cd..8623872 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -477,6 +477,35 @@ public class SeqCanvas extends JComponent
                 drawNorthScale(g, startRes, endx, ypos);
             }
 
+            if (av.hasHiddenColumns && av.showHiddenMarkers)
+            {
+              g.setColor(Color.blue);
+              int res;
+              for (int i = 0; i < av.getColumnSelection().getHiddenColumns().size();
+                   i++)
+              {
+                res = av.getColumnSelection().findHiddenRegionPosition(i) -
+                    startRes;
+
+                if (res < 0 || res > endx - startRes)
+                  continue;
+
+                gg.fillPolygon(new int[]
+                               {res * av.charWidth - av.charHeight / 4,
+                               res * av.charWidth + av.charHeight / 4,
+                               res * av.charWidth},
+                               new int[]
+                               {
+                               ypos - (av.charHeight / 2),
+                               ypos - (av.charHeight / 2),
+                               ypos - (av.charHeight / 2) + 8
+                }, 3);
+
+              }
+            }
+
+
+
             // When printing we have an extra clipped region,
             // the Printable page which we need to account for here
             Shape clip = g.getClip();
@@ -568,15 +597,14 @@ public class SeqCanvas extends JComponent
 
           draw(g1, blockStart, blockEnd, startSeq, endSeq, offset);
 
-          g1.setColor(Color.blue);
-          g1.drawLine( (blockEnd - blockStart + 1) * av.charWidth - 1,
-                      startSeq + offset,
-                      (blockEnd - blockStart + 1) * av.charWidth - 1,
-                      startSeq + (endSeq - startSeq) * av.charHeight + offset);
-          g1.drawLine( (blockEnd - blockStart + 1) * av.charWidth,
-                      startSeq + offset,
-                      (blockEnd - blockStart + 1) * av.charWidth,
-                      startSeq + (endSeq - startSeq) * av.charHeight + offset);
+          if(av.getShowHiddenMarkers())
+          {
+            g1.setColor(Color.blue);
+            g1.drawLine( (blockEnd - blockStart + 1) * av.charWidth - 1,
+                        startSeq + offset,
+                        (blockEnd - blockStart + 1) * av.charWidth - 1,
+                        startSeq + (endSeq - startSeq) * av.charHeight + offset);
+          }
 
           g1.translate( -screenY * av.charWidth, 0);
           screenY += blockEnd - blockStart + 1;
@@ -588,6 +616,7 @@ public class SeqCanvas extends JComponent
           blockEnd = blockStart + (endRes - startRes) - screenY;
           g1.translate(screenY * av.charWidth, 0);
           draw(g1, blockStart, blockEnd, startSeq, endSeq, offset);
+
           g1.translate( -screenY * av.charWidth, 0);
         }
       }