X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqCanvas.java;h=8a873a22607c4854a2ebb52d3f7241a2186c6e48;hb=bec15db14ab505ae653c5398ba9b51a6b018947d;hp=1e669280379ad3d18f4367d33d293692681f4402;hpb=32a72d077d2371f4566688fbd103103d8505b27f;p=jalview.git

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 1e66928..8a873a2 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -417,7 +417,7 @@ public class SeqCanvas extends JComponent
      */
     String getMask()
     {
-      String mask = "0";
+      String mask = "00";
       int maxWidth = 0;
       int tmp;
       for(int i=0; i<av.alignment.getHeight(); i++)
@@ -569,8 +569,6 @@ public class SeqCanvas extends JComponent
             g.translate(-LABEL_WEST, 0);
 
             ypos += cHeight+getAnnotationHeight()+hgap;
-            if(av.showAnnotation)
-              ypos -= 3;
 
             startRes += cWidth;
         }