X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqPanel.java;h=162f978ab4adec11a87e246a6f35f6a8a2df3687;hb=e542a2b9968ee6a7def19e79e84c27684ee686e3;hp=3bc9bc56f33848ec04e901519cc1d0199fb423fd;hpb=b42085fdaf6dbfad35130446b99406d6f183ea5a;p=jalview.git

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 3bc9bc5..162f978 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -6,8 +6,6 @@ import jalview.datamodel.*;
 import javax.swing.*;
 import java.util.*;
 import jalview.schemes.*;
-import jalview.analysis.*;
-
 
 public class SeqPanel extends JPanel
 {
@@ -349,11 +347,12 @@ public class SeqPanel extends JPanel
   {
 
     if ( jalview.util.Comparison.isGap( av.alignment.getSequenceAt(seq).getSequence().charAt(j)))
-        av.alignment.getSequenceAt(seq).deleteCharAt(j);
+      av.alignment.getSequenceAt(seq).deleteCharAt(j);
 
     av.alignment.getWidth();
     repaint();
     seqEditOccurred=seq;
+
   }
 
 
@@ -361,6 +360,16 @@ public class SeqPanel extends JPanel
   {
     av.updateConservation();
     av.updateConsensus();
+
+    ColourSchemeI cs = av.getGlobalColourScheme();
+    if(cs instanceof ConservationColourScheme)
+      cs = ( (ConservationColourScheme) cs).cs;
+
+    if(cs instanceof ClustalxColourScheme)
+      cs = new ClustalxColourScheme(av.alignment.getSequences(), av.alignment.getWidth());
+
+    ap.alignFrame.changeColour(cs);
+
   }
 
 //////////////////////////////////////////