X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqPanel.java;h=1903294140283cfedd325160b1cd6cd3462a2a0c;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=a57c2e458136eebdaa77c451edb77975eba70a65;hpb=f7bce11fb6036cd7f94e17c9f136970984a9402a;p=jalview.git diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java index a57c2e4..1903294 100644 --- a/src/jalview/gui/SeqPanel.java +++ b/src/jalview/gui/SeqPanel.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -819,17 +819,20 @@ public class SeqPanel extends JPanel implements MouseListener, .getType())) { tmpString = features[i].getDescription(); - int startTag = tmpString.toUpperCase().indexOf(""); + String tmp2up=tmpString.toUpperCase(); + int startTag = tmp2up.indexOf(""); if (startTag > -1) { tmpString = tmpString.substring(startTag + 6); + tmp2up = tmp2up.substring(startTag+6); } - int endTag = tmpString.toUpperCase().indexOf(""); + int endTag = tmp2up.indexOf(""); if (endTag > -1) { tmpString = tmpString.substring(0, endTag); + tmp2up = tmp2up.substring(0, endTag); } - endTag = tmpString.toUpperCase().indexOf(""); + endTag = tmp2up.indexOf(""); if (endTag > -1) { tmpString = tmpString.substring(0, endTag);