X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSeqPanel.java;h=f8e09a492312c766e806ea18229154ddd4773116;hb=1a7569b26f3f24011b33f0551ecbf5377b1fb85b;hp=ec02bb1a210ad35c08cc90ecf1433fa0c8580c4a;hpb=9be95195238a6cacaf586724f01e0ddad9ed9d01;p=jalview.git

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index ec02bb1..f8e09a4 100644
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -2283,7 +2283,7 @@ public class SeqPanel extends JPanel
     HiddenColumns hs = new HiddenColumns();
     MappingUtils.mapColumnSelection(colsel, hidden, sourceAv, av, cs, hs);
     av.setColumnSelection(cs);
-    av.getAlignment().setHiddenColumns(hs);
+    boolean hiddenChanged = av.getAlignment().setHiddenColumns(hs);
 
     // lastly, update any dependent dialogs
     if (ap.getCalculationDialog() != null)
@@ -2291,7 +2291,11 @@ public class SeqPanel extends JPanel
       ap.getCalculationDialog().validateCalcTypes();
     }
 
-    PaintRefresher.Refresh(this, av.getSequenceSetId());
+    /*
+     * repaint alignment, and also Overview or Structure
+     * if hidden column selection has changed
+     */
+    ap.paintAlignment(hiddenChanged, hiddenChanged);
 
     return true;
   }