X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceFetcher.java;h=67a3eff124f9310402e0fe977a430b09dd4cac5e;hb=b27f973bd368619235ff19f706afb28b81c731e7;hp=e3282d8e37d09403c1f730e1df4f99813a85bcbb;hpb=09feea69607bcbc761c50a7911272f0499ee57e9;p=jalview.git

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index e3282d8..67a3eff 100755
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -249,7 +249,7 @@ public class SequenceFetcher
       while (en.hasMoreElements())
       {
         UniprotEntry entry = (UniprotEntry) en.nextElement();
-        StringBuffer name = new StringBuffer(">Uniprot/Swiss-Prot");
+        StringBuffer name = new StringBuffer(">UniProt/Swiss-Prot");
         Enumeration en2 = entry.getAccession().elements();
         while (en2.hasMoreElements())
         {
@@ -288,10 +288,14 @@ public class SequenceFetcher
         }
 
         sequence[i].getDatasetSequence().setPDBId(onlyPdbEntries);
-        e = entry.getFeature().elements();
-        while(e.hasMoreElements())
+        if (entry.getFeature() != null)
         {
-          sequence[i].getDatasetSequence().addSequenceFeature((SequenceFeature)e.nextElement());
+          e = entry.getFeature().elements();
+          while (e.hasMoreElements())
+          {
+            sequence[i].getDatasetSequence().addSequenceFeature( (
+                SequenceFeature) e.nextElement());
+          }
         }
       }
     }
@@ -341,7 +345,7 @@ public class SequenceFetcher
 
   SequenceI[] parseResult(String result, String title)
   {
-    String format = IdentifyFile.Identify(result, "Paste");
+    String format = new IdentifyFile().Identify(result, "Paste");
     SequenceI[] sequences = null;
 
     if (FormatAdapter.formats.contains(format))