X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceFetcher.java;h=ad3fcc93a5b6dbf28484f39f733bf7b7c51d4483;hb=409fd993c6e32e999b24082aae107a043a590f8f;hp=09d33c8d8d14f40d531f213fc931a897cb26cf0d;hpb=91e4b8c7220621cb79da7a25e683ef6b62b610ff;p=jalview.git

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 09d33c8..ad3fcc9 100755
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -22,7 +22,6 @@ package jalview.gui;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.DBRefEntry;
-import jalview.datamodel.DBRefSource;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.io.FormatAdapter;
@@ -551,7 +550,7 @@ public class SequenceFetcher extends JPanel implements Runnable
                             Integer.valueOf(nqueries).toString(),
                             proxy.getDbName() }), Thread.currentThread()
                         .hashCode());
-        isAliSource = proxy.isA(DBRefSource.ALIGNMENTDB);
+        isAliSource = proxy.isAlignmentSource();
         if (proxy.getAccessionSeparator() == null)
         {
           while (en.hasNext())
@@ -638,8 +637,7 @@ public class SequenceFetcher extends JPanel implements Runnable
                 DBRefEntry dbr = new DBRefEntry(), found[] = null;
                 dbr.setSource(proxy.getDbSource());
                 dbr.setVersion(null);
-                String accId = DBRefUtils.processQueryToAccessionFor(proxy,
-                        q);
+                String accId = proxy.getAccessionIdFromQuery(q);
                 dbr.setAccessionId(accId);
                 boolean rfound = false;
                 for (int r = 0; r < rs.length; r++)