X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceFetcher.java;h=d596183b28d12732a9dfe69b144c0858441d67d1;hb=7b414ed4f2cd0a458ec2cc60a181b1aadd24c73e;hp=3fa00f5d491c1a6583f1b56db8bde4cbfe0b5035;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 3fa00f5..d596183 100755
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -802,16 +802,16 @@ public class SequenceFetcher extends JPanel implements Runnable
       {
         for (int i = 0; i < al.getHeight(); i++)
         {
-          alignFrame.viewport.alignment.addSequence(al.getSequenceAt(i)); // this
+          alignFrame.viewport.getAlignment().addSequence(al.getSequenceAt(i)); // this
           // also
           // creates
           // dataset
           // sequence
           // entries
         }
-        alignFrame.viewport.setEndSeq(alignFrame.viewport.alignment
+        alignFrame.viewport.setEndSeq(alignFrame.viewport.getAlignment()
                 .getHeight());
-        alignFrame.viewport.alignment.getWidth();
+        alignFrame.viewport.getAlignment().getWidth();
         alignFrame.viewport.firePropertyChange("alignment", null,
                 alignFrame.viewport.getAlignment().getSequences());
       }