X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceFetcher.java;h=f06bd97ebbf0db6f451874d80c940b344eb0a9f4;hb=1a7a229e4e1a3f6960a34543333748477022c234;hp=24db866810eb546f001dd10dd0af01996d5ad464;hpb=96026e673c3629afa54a0d03be4b0022c7b42869;p=jalview.git

diff --git a/src/jalview/gui/SequenceFetcher.java b/src/jalview/gui/SequenceFetcher.java
index 24db866..f06bd97 100755
--- a/src/jalview/gui/SequenceFetcher.java
+++ b/src/jalview/gui/SequenceFetcher.java
@@ -417,13 +417,15 @@ public class SequenceFetcher extends JPanel implements Runnable
     /*
      * tidy inputs and check there is something to search for
      */
-    String text = textArea.getText();
+    String t0 = textArea.getText();
+    String text = text.trim(); // BH 2019.01.30
     if (replacePunctuation.isEnabled() && replacePunctuation.isSelected())
     {
       text = text.replace(",", ";");
     }
     text = text.replaceAll("(\\s|[,; ])+", ";");
-    textArea.setText(text);
+    if (!t0.equals(text)) // BH 2019.01.30 no need to do setting if it is the same
+    	textArea.setText(text);
     if (text.isEmpty())
     {
       // todo i18n
@@ -750,13 +752,14 @@ public class SequenceFetcher extends JPanel implements Runnable
 
     for (String q : queries)
     {
-      DBRefEntry dbr = new DBRefEntry();
-      dbr.setSource(proxy.getDbSource());
-      dbr.setVersion(null);
+    	// BH 2019.01.25 dbr is never used.
+//      DBRefEntry dbr = new DBRefEntry();
+//      dbr.setSource(proxy.getDbSource());
+//      dbr.setVersion(null);
       String accId = proxy.getAccessionIdFromQuery(q);
-      dbr.setAccessionId(accId);
+//      dbr.setAccessionId(accId);
       boolean rfound = false;
-      for (int r = 0; r < rs.length; r++)
+      for (int r = 0, nr = rs.length; r < nr; r++)
       {
         if (rs[r] != null)
         {