X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSequenceRenderer.java;h=ec93abf246f244f59897e1ba794ce5c91b17450e;hb=196235e9be03525849e4900a8a3ab85e28134d29;hp=ab6c1aba4ff84585b3dad6aa52c59953edfd57b4;hpb=c77ccc33971183dba9cb66b40886a6b61fe8eaa0;p=jalview.git

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index ab6c1ab..ec93abf 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -224,7 +224,13 @@ public class SequenceRenderer
 
         if(monospacedFont && av.showText && allGroups.length==0 && !av.getColourText())
         {
+          if(av.renderGaps)
           graphics.drawString(seq.getSequence(start, end + 1), 0, y1);
+         else
+         {
+           char gap = av.getGapCharacter();
+           graphics.drawString( seq.getSequence(start, end+1).replace(gap, ' '), 0, y1);
+         }
         }
         else
         {
@@ -352,7 +358,7 @@ public class SequenceRenderer
     {
       int pady = av.charHeight / 5;
       int charOffset = 0;
-      graphics.setColor(Color.lightGray);
+      graphics.setColor(Color.black);
       graphics.fillRect(x1, y1, av.charWidth, av.charHeight);
       graphics.setColor(Color.white);