X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=02a8ed7e6cd031b6e975ce97b456daafd15b5469;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=8c290b5b45fe315b88baa9f2b5d84ab28f5be597;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git
diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index 8c290b5..02a8ed7 100755
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,32 +1,39 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
-import java.util.*;
+import jalview.datamodel.SequenceGroup;
+import jalview.jbgui.GSliderPanel;
+import jalview.schemes.ColourSchemeI;
+import jalview.util.MessageManager;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
+import java.awt.event.ActionEvent;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.Iterator;
-import jalview.datamodel.*;
-import jalview.jbgui.*;
-import jalview.schemes.*;
+import javax.swing.JInternalFrame;
+import javax.swing.JLayeredPane;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
/**
* DOCUMENT ME!
@@ -50,13 +57,13 @@ public class SliderPanel extends GSliderPanel
* Creates a new SliderPanel object.
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param value
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param forConserve
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public SliderPanel(final AlignmentPanel ap, int value,
boolean forConserve, ColourSchemeI cs)
@@ -69,13 +76,15 @@ public class SliderPanel extends GSliderPanel
if (forConservation)
{
- label.setText("Enter value to increase conservation visibility");
+ label.setText(MessageManager
+ .getString("label.enter_value_increase_conservation_visibility"));
slider.setMinimum(0);
slider.setMaximum(100);
}
else
{
- label.setText("Enter % identity above which to colour residues");
+ label.setText(MessageManager
+ .getString("label.enter_percentage_identity_above_which_colour_residues"));
slider.setMinimum(0);
slider.setMaximum(100);
}
@@ -105,11 +114,11 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param source
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
@@ -131,10 +140,12 @@ public class SliderPanel extends GSliderPanel
sp.cs = cs;
}
- conservationSlider.setTitle("Conservation Colour Increment (" + source
- + ")");
+ conservationSlider
+ .setTitle(MessageManager.formatMessage(
+ "label.conservation_colour_increment",
+ new String[] { source }));
- if (ap.av.alignment.getGroups() != null)
+ if (ap.av.getAlignment().getGroups() != null)
{
sp.setAllGroupsCheckEnabled(true);
}
@@ -161,8 +172,8 @@ public class SliderPanel extends GSliderPanel
if (!conservationSlider.isVisible())
{
- Desktop.addInternalFrame(conservationSlider, conservationSlider
- .getTitle(), 420, 90, false);
+ Desktop.addInternalFrame(conservationSlider,
+ conservationSlider.getTitle(), 420, 90, false);
conservationSlider
.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
{
@@ -180,11 +191,11 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param source
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
@@ -208,9 +219,11 @@ public class SliderPanel extends GSliderPanel
pid.cs = cs;
}
- PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
+ PIDSlider.setTitle(MessageManager
+ .formatMessage("label.percentage_identity_thereshold",
+ new String[] { source }));
- if (ap.av.alignment.getGroups() != null)
+ if (ap.av.getAlignment().getGroups() != null)
{
pid.setAllGroupsCheckEnabled(true);
}
@@ -257,7 +270,7 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param i
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void valueChanged(int i)
{
@@ -266,57 +279,46 @@ public class SliderPanel extends GSliderPanel
return;
}
- ColourSchemeI toChange = null;
- Vector allGroups = null;
- int groupIndex = 0;
+ ColourSchemeI toChange = cs;
+ Iterator allGroups = null;
if (allGroupsCheck.isSelected())
{
- allGroups = ap.av.alignment.getGroups();
- groupIndex = allGroups.size() - 1;
- }
- else
- {
- toChange = cs;
+ allGroups = ap.av.getAlignment().getGroups().listIterator();
}
- while (groupIndex > -1)
+ while (toChange != null)
{
- if (allGroups != null)
+ if (forConservation)
{
- toChange = ((SequenceGroup) allGroups.get(groupIndex)).cs;
-
- if (toChange == null)
- {
- groupIndex--;
-
- continue;
- }
+ toChange.setConservationInc(i);
}
-
- if (forConservation)
+ else
+ {
+ toChange.setThreshold(i, ap.av.isIgnoreGapsConsensus());
+ }
+ if (allGroups != null && allGroups.hasNext())
{
- if (toChange.conservationApplied())
+ while ((toChange = allGroups.next().cs) == null
+ && allGroups.hasNext())
{
- toChange.setConservationInc(i);
+ ;
}
}
else
{
- toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
+ toChange = null;
}
-
- groupIndex--;
}
- ap.seqPanel.seqCanvas.repaint();
+ ap.getSeqPanel().seqCanvas.repaint();
}
/**
* DOCUMENT ME!
*
* @param b
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void setAllGroupsCheckEnabled(boolean b)
{
@@ -327,7 +329,7 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param e
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void valueField_actionPerformed(ActionEvent e)
{
@@ -345,7 +347,7 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param value
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void setValue(int value)
{