X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=23b76e33a9379f5a55d27730a0936aa1570ce6f7;hb=fb1cdebe4a9d93839c81a2d3eb39e8da9cb83d64;hp=97c5e10c2c02c3195c7f1d95e38296eaf11865ea;hpb=99c58ee0ae2a848f982552e53feaf6d5cb9925e5;p=jalview.git diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java index 97c5e10..23b76e3 100755 --- a/src/jalview/gui/SliderPanel.java +++ b/src/jalview/gui/SliderPanel.java @@ -1,252 +1,359 @@ /* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ - + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ package jalview.gui; -import jalview.jbgui.*; -import jalview.schemes.*; -import jalview.datamodel.*; +import java.util.*; + import java.awt.event.*; -import javax.swing.event.*; import javax.swing.*; -import java.util.*; +import javax.swing.event.*; + +import jalview.datamodel.*; +import jalview.jbgui.*; +import jalview.schemes.*; -public class SliderPanel extends GSliderPanel +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class SliderPanel + extends GSliderPanel { + static JInternalFrame conservationSlider; + static JInternalFrame PIDSlider; AlignmentPanel ap; boolean forConservation = true; ColourSchemeI cs; - static JInternalFrame conservationSlider; - static JInternalFrame PIDSlider; + /** + * Creates a new SliderPanel object. + * + * @param ap DOCUMENT ME! + * @param value DOCUMENT ME! + * @param forConserve DOCUMENT ME! + * @param cs DOCUMENT ME! + */ + public SliderPanel(final AlignmentPanel ap, int value, boolean forConserve, + ColourSchemeI cs) + { + this.ap = ap; + this.cs = cs; + forConservation = forConserve; + undoButton.setVisible(false); + applyButton.setVisible(false); + + if (forConservation) + { + label.setText("Enter value to increase conservation visibility"); + slider.setMinimum(0); + slider.setMaximum(100); + } + else + { + label.setText("Enter % identity above which to colour residues"); + slider.setMinimum(0); + slider.setMaximum(100); + } + + slider.addChangeListener(new ChangeListener() + { + public void stateChanged(ChangeEvent evt) + { + valueField.setText(slider.getValue() + ""); + valueChanged(slider.getValue()); + } + }); + + slider.addMouseListener(new MouseAdapter() + { + public void mouseReleased(MouseEvent evt) + { + ap.paintAlignment(true); + } + }); + + slider.setValue(value); + valueField.setText(value + ""); + } - public static int setConservationSlider(AlignmentPanel ap, ColourSchemeI cs, String source) + /** + * DOCUMENT ME! + * + * @param ap DOCUMENT ME! + * @param cs DOCUMENT ME! + * @param source DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public static int setConservationSlider(AlignmentPanel ap, + ColourSchemeI cs, String source) { SliderPanel sp = null; - ConservationColourScheme ccs = (ConservationColourScheme)cs; - if(conservationSlider == null) + if (conservationSlider == null) { - sp = new SliderPanel(ap, ccs.inc, true, cs); + sp = new SliderPanel(ap, cs.getConservationInc(), true, cs); conservationSlider = new JInternalFrame(); conservationSlider.setContentPane(sp); conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); } else { - sp = (SliderPanel)conservationSlider.getContentPane(); - sp.cs = cs; + sp = (SliderPanel) conservationSlider.getContentPane(); + sp.cs = cs; } - conservationSlider.setTitle("Conservation Colour Increment ("+source+")"); - if(ap.av.alignment.getGroups()!=null) - sp.setAllGroupsCheckEnabled( true ); + conservationSlider.setTitle("Conservation Colour Increment (" + + source + ")"); + + if (ap.av.alignment.getGroups() != null) + { + sp.setAllGroupsCheckEnabled(true); + } else - sp.setAllGroupsCheckEnabled( false); + { + sp.setAllGroupsCheckEnabled(false); + } return sp.getValue(); } + /** + * DOCUMENT ME! + */ public static void showConservationSlider() { - try{ + try + { PIDSlider.setClosed(true); PIDSlider = null; - }catch(Exception ex){} - + } + catch (Exception ex) + { + } - if(!conservationSlider.isVisible()) + if (!conservationSlider.isVisible()) { - Desktop.addInternalFrame(conservationSlider, conservationSlider.getTitle(), 420, 90, false); + Desktop.addInternalFrame(conservationSlider, + conservationSlider.getTitle(), 420, 90, false); conservationSlider.addInternalFrameListener(new javax.swing.event. InternalFrameAdapter() { - public void internalFrameClosed(javax.swing.event.InternalFrameEvent e) + public void internalFrameClosed( + javax.swing.event.InternalFrameEvent e) { conservationSlider = null; } }); conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); } - } - public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source) - { - SliderPanel pid = null; - - int threshold = 50; - if (cs instanceof ResidueColourScheme) - threshold = ( ( (ResidueColourScheme) cs).getThreshold()); - else if (cs instanceof ScoreColourScheme) - threshold = ( ( (ScoreColourScheme) cs).getThreshold()); - - - if(PIDSlider == null) - { - pid = new SliderPanel(ap, threshold, false, cs); - PIDSlider = new JInternalFrame(); - PIDSlider.setContentPane(pid); - PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); - } - else - { - pid = (SliderPanel)PIDSlider.getContentPane(); - pid.cs = cs; - } - PIDSlider.setTitle("Percentage Identity Threshold ("+source+")"); - - if (ap.av.alignment.getGroups() != null) - pid.setAllGroupsCheckEnabled(true); - else - pid.setAllGroupsCheckEnabled(false); - - return pid.getValue(); - - } - - public static void showPIDSlider() - { - try{ - conservationSlider.setClosed(true); - conservationSlider = null; - }catch(Exception ex){} - - if(!PIDSlider.isVisible()) - { - Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, false); - PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); - PIDSlider.addInternalFrameListener(new javax.swing.event. - InternalFrameAdapter() - { - public void internalFrameClosed(javax.swing.event.InternalFrameEvent e) - { - PIDSlider = null; - } - }); + /** + * DOCUMENT ME! + * + * @param ap DOCUMENT ME! + * @param cs DOCUMENT ME! + * @param source DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, + String source) + { + SliderPanel pid = null; + + int threshold = cs.getThreshold(); + + if (PIDSlider == null) + { + pid = new SliderPanel(ap, threshold, false, cs); + PIDSlider = new JInternalFrame(); + PIDSlider.setContentPane(pid); PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); } + else + { + pid = (SliderPanel) PIDSlider.getContentPane(); + pid.cs = cs; + } - } - + PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")"); - public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, ColourSchemeI cs) - { - this.ap = ap; - this.cs = cs; - forConservation = forConserve; - undoButton.setVisible(false); - applyButton.setVisible(false); - if(forConservation) + if (ap.av.alignment.getGroups() != null) { - label.setText("Enter value to increase conservation visibility"); - slider.setMinimum(0); - slider.setMaximum(50); + pid.setAllGroupsCheckEnabled(true); } else { - label.setText("Enter % identity above which to colour residues"); - slider.setMinimum(0); - slider.setMaximum(100); + pid.setAllGroupsCheckEnabled(false); } + return pid.getValue(); + } + /** + * DOCUMENT ME! + */ + public static void showPIDSlider() + { + try + { + conservationSlider.setClosed(true); + conservationSlider = null; + } + catch (Exception ex) + { + } - slider.addChangeListener( new ChangeListener() + if (!PIDSlider.isVisible()) { - public void stateChanged(ChangeEvent evt) + Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, + false); + PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); + PIDSlider.addInternalFrameListener(new javax.swing.event. + InternalFrameAdapter() { - valueField.setText( slider.getValue()+"" ); - valueChanged( slider.getValue() ); - } - }); - - slider.setValue(value); - valueField.setText(value+""); + public void internalFrameClosed( + javax.swing.event.InternalFrameEvent e) + { + PIDSlider = null; + } + }); + PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); + } } + /** + * DOCUMENT ME! + * + * @param i DOCUMENT ME! + */ public void valueChanged(int i) { - if(cs == null) + if (cs == null) + { return; + } ColourSchemeI toChange = null; Vector allGroups = null; int groupIndex = 0; - if(allGroupsCheck.isSelected()) + if (allGroupsCheck.isSelected()) { allGroups = ap.av.alignment.getGroups(); - groupIndex = allGroups.size()-1; + groupIndex = allGroups.size() - 1; } else + { toChange = cs; + } - - while( groupIndex > -1 ) + while (groupIndex > -1) { - if(allGroups!=null) - toChange = ((SequenceGroup)allGroups.get(groupIndex)).cs; + if (allGroups != null) + { + toChange = ( (SequenceGroup) allGroups.get(groupIndex)).cs; + + if (toChange == null) + { + groupIndex--; + + continue; + } + } if (forConservation) { - if (toChange instanceof ConservationColourScheme) - ( (ConservationColourScheme) toChange).inc = i; + if (toChange.conservationApplied()) + { + toChange.setConservationInc(i); + } } else { - ( (ResidueColourScheme) toChange).setThreshold(i); + toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus()); } groupIndex--; } ap.seqPanel.seqCanvas.repaint(); - } + /** + * DOCUMENT ME! + * + * @param b DOCUMENT ME! + */ public void setAllGroupsCheckEnabled(boolean b) { allGroupsCheck.setEnabled(b); } - + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ public void valueField_actionPerformed(ActionEvent e) { - try{ + try + { int i = Integer.parseInt(valueField.getText()); slider.setValue(i); } - catch(Exception ex) + catch (NumberFormatException ex) { - valueField.setText( slider.getValue()+"" ); + valueField.setText(slider.getValue() + ""); } } + /** + * DOCUMENT ME! + * + * @param value DOCUMENT ME! + */ public void setValue(int value) { slider.setValue(value); } + + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ public int getValue() { return Integer.parseInt(valueField.getText()); } + public void slider_mouseReleased(MouseEvent e) + { + if (ap.overviewPanel != null) + { + ap.overviewPanel.updateOverviewImage(); + } + } }