X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=3eff177853ff40512e05a9b56a8bc420c45f1c0c;hb=260c50cca8fff9b7e15e311dfc9fd9dda685950b;hp=77fa4008db8e245c1bf0efd9b13200c1adc61d6d;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index 77fa400..3eff177 100755
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,19 +1,20 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.gui;
 
@@ -26,6 +27,7 @@ import javax.swing.event.*;
 import jalview.datamodel.*;
 import jalview.jbgui.*;
 import jalview.schemes.*;
+import jalview.util.MessageManager;
 
 /**
  * DOCUMENT ME!
@@ -68,13 +70,13 @@ public class SliderPanel extends GSliderPanel
 
     if (forConservation)
     {
-      label.setText("Enter value to increase conservation visibility");
+      label.setText(MessageManager.getString("label.enter_value_increase_conservation_visibility"));
       slider.setMinimum(0);
       slider.setMaximum(100);
     }
     else
     {
-      label.setText("Enter % identity above which to colour residues");
+      label.setText(MessageManager.getString("label.enter_percentage_identity_above_which_colour_residues"));
       slider.setMinimum(0);
       slider.setMaximum(100);
     }
@@ -133,7 +135,7 @@ public class SliderPanel extends GSliderPanel
     conservationSlider.setTitle("Conservation Colour Increment  (" + source
             + ")");
 
-    if (ap.av.alignment.getGroups() != null)
+    if (ap.av.getAlignment().getGroups() != null)
     {
       sp.setAllGroupsCheckEnabled(true);
     }
@@ -160,8 +162,8 @@ public class SliderPanel extends GSliderPanel
 
     if (!conservationSlider.isVisible())
     {
-      Desktop.addInternalFrame(conservationSlider, conservationSlider
-              .getTitle(), 420, 90, false);
+      Desktop.addInternalFrame(conservationSlider,
+              conservationSlider.getTitle(), 420, 90, false);
       conservationSlider
               .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
               {
@@ -209,7 +211,7 @@ public class SliderPanel extends GSliderPanel
 
     PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
 
-    if (ap.av.alignment.getGroups() != null)
+    if (ap.av.getAlignment().getGroups() != null)
     {
       pid.setAllGroupsCheckEnabled(true);
     }
@@ -266,12 +268,12 @@ public class SliderPanel extends GSliderPanel
     }
 
     ColourSchemeI toChange = null;
-    Vector allGroups = null;
+    List<SequenceGroup> allGroups = null;
     int groupIndex = 0;
 
     if (allGroupsCheck.isSelected())
     {
-      allGroups = ap.av.alignment.getGroups();
+      allGroups = ap.av.getAlignment().getGroups();
       groupIndex = allGroups.size() - 1;
     }
     else